Sequence
atgc intronic sequence ATGC exonic sequencegtgtattcctcttttctatccacccagttacctttaacacattcaaccagatagaaccaccaaaaacaaagattgataatttatgtttgcttcttcctcatttaattttgtagGCAATTCCCAGAGAGGCAAAAGAATACGAGCTTGGAGAAGCTAAATATTATCTGGTGGTGGTATGGAATGGGATCATGTGGCAGTGCTTCTACTTAGGAG
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110712563|gb|EE090324.1|EE090324EST: CGCCACCGTCTTTTGCACAGTGAGGATGCTGGTTAATAATGACTTTCCAG -CATTTCCCAGAGAGGGCAAA-GAATAC
genomic: CGCCACCTTCTTTTGCACAGTGGGGATGCTGGTTAATAATGACTTTC-AGgtgtattcct ... aattttgtagGCAATTCCCAGAGAGG-CAAAAGAATAC
EST:
gi|110718355|gb|EE095092.1|EE095092EST: TCGCCACCGTCTTTTGCACAGTGGGGATGCTGGGTAATAATGAATTTCAA GCAATTCCCAG
genomic: TCGCCACCTTCTTTTGCACAGTGGGGATGCTGGTTAATAATGACTTTCAGgtgtattcct ... aattttgtagGCAATTCCCAG
EST:
gi|110711721|gb|EE088522.1|EE088522EST: TCGCCACCGTCTTTTGCACAGTGGGGATGCTGGTTTATAATGACTTTCAG GCAATTCCCAGAGGGGCAAAAGA-TACGAGCTTGGAG
genomic: TCGCCACCTTCTTTTGCACAGTGGGGATGCTGGTTAATAATGACTTTCAGgtgtattcct ... aattttgtagGCAATTCCCAGAGAGGCAAAAGAATACGAGCTTGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accaaaaacaaagattgataatttatgtttgcttcttcctcatttaattttgtagGCAATTCCCAGAGAGGCAAAAGAATACGAGCTTGGAGAAGCTAAATATTATCTGGTGGTGGTATGGAATGGGATCATGTGGCAGTGCTTCTACTTAGGAG
atttaat putative branch site (score: 4)
cttcttcctcattta CT-rich tract
aaacaaagattgataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtattcctcttttctatccacccagttacctttaacacattcaaccagatagaaccaccaaaaacaaagattgataatttatgtttgcttcttcctcatttaattttgtagGCAATTCCCAGAGAGGCAAAAGAATACGAGCTTGGAGAAGCTAAATATTATCTGGTGGTGGTATGGAATGGGATCATGTGGCAGTGCTTCTACTTAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG