Sequence
atgc intronic sequence ATGC exonic sequencegtctatgttaattaattggatccctctccctgtctctcattttttcagtacttcaccatttcatcatttcccttttactcctgcagGTCTTAACAGATGTGGAAAGAGCTGTAGGTTGAGATGGACGAATTATTTAAGGCCTGATATTAAAAGAGGAAAATTTTCTCAAGAAGAAGAACAGACAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g05670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA01G09280.1 (Glycine max), 3'ss of exon 1
----------gtctatgttaattaattgg-atccctctccctgtctctcattttttcag--tacttcac-catttcatcatt--------tcccttttactc--ctgcagGTCTTAACAGATGTGGAAAGAGCTGTAGGTTGAGATGGACGAATTATTTAAGGCCTGATATTAAAAGAGGAAAATTTTCTCAAGAAGAAGAACAGACAAT
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gtactactatatttattgtattttagtgtcaagaatctcataattaaatattttctcatcttatgccacatatataactaatggggatggtcatttgtatttggtaatagGACTCAACAGGTGTGGCAAAAGTTGTAGGTTAAGGTGGACGAACTACTTGAGGCCTGATATTAAAAGAGGGAAATTTTCCCAAGAAGAAGAACAAACAAT
upper sequence: Vv18s0001g05670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA02G13770.1 (Glycine max), 3'ss of exon 1
------gtctatgttaattaattggatccct---ctccctgtct-ctcattttttcag--tacttcaccatttcatcatttcccttttactc--ctgcagGTCTTAACAGATGTGGAAAGAGCTGTAGGTTGAGATGGACGAATTATTTAAGGCCTGATATTAAAAGAGGAAAATTTTCTCAAGAAGAAGAACAGACAAT
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atgtatatttatgttatatcatactgtcataaaactcataattagtttatcctcttaggccacataactaatggaggtgatcatttgtatttggtaacagGACTCAACAGGTGTGGCAAAAGTTGTAGGTTAAGGTGGACGAACTACTTGAGGCCCGACATTAAAAGAGGGAAGTTTTCCCAAGAAGAAGAACAAACAAT
upper sequence: Vv18s0001g05670.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S389_41V6.1 (Physcomitrella patens), 3'ss of exon 1
-------------------------------------gtctatgttaattaattggatccctctccctgtctctcattttttcagtacttca--ccatttcatcatttcccttt--tactcctgcagGTCTTAACAGATGTGGAAAGAGCTGTAGGTTGAGATGGACGAATTATTTAAGGCCTGATATTAAAAGAGGAAAATTTTCTCAAGAAGAAGAACAGACAAT
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gtcgtcctggaccgcctatggacctcccttccattaattgcaaaaaaactactggattcggaaattttagttgatgatggttggatggctcaaactgaatgtgcgtccgtgtttggtatacttgtagGTCTGACAAGATGCGGCAAGAGCTGTAGATTGAGATGGACGAACTATTTGCGGCCAGATATCAAGCGTGGCCGATTCTCCGAAGCCGAAGACCAGACGAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtctctcattttttcagtacttcaccatttcatcatttcccttttactcctgcagGTCTTAACAGATGTGGAAAGAGCTGTAGGTTGAGATGGACGAATTATTTAAGGCCTGATATTAAAAGAGGAAAATTTTCTCAAGAAGAAGAACAGACAAT
ccatttcatcatttcc CT-rich tract
tcatttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctatgttaattaattggatccctctccctgtctctcattttttcagtacttcaccatttcatcatttcccttttactcctgcagGTCTTAACAGATGTGGAAAGAGCTGTAGGTTGAGATGGACGAATTATTTAAGGCCTGATATTAAAAGAGGAAAATTTTCTCAAGAAGAAGAACAGACAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC