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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcacttatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtagGTTGCCCAAGTGCTTCTCACACTGCCTTACTCGTTTTCACAACTGGGGATGTTATCTGGAATTCTCTTTCAACTGTTTTATGGGTTGATGGGGAGTTGGA

Basic information

species Vitis vinifera
transcript Vv18s0001g03540.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G43150.2 (Glycine max), 3'ss of exon 2
gcacttatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtagGTTGCCCAAGTGCTTCTCACACTGCCTTACTCGTTTTCACAACTGGGGATGTTATCTGGAATTCTCTTTCAACTGTTTTATGGGTTGATGGGGAGTTGGA
                                                             | |  ||| | | |    |||     |||||||   || |||||||| |||||| | || ||||| || || || |||||||||||||||||||||||||| ||  | ||||| || ||||||||  ||||||| || ||||
--------------------------------------------------------gtctcatgattttccttgtttgttgttggatttcatttc--atatagGTTGCACAAGTGTTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGA

upper sequence: Vv18s0001g03540.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G11540.1 (Glycine max), 3'ss of exon 2
gcacttatgcttttgtgtttatttagttgtttttcgttgagattatgtgttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtagGTTGCCCAAGTGCTTCTCACACTGCCTTACTCGTTTTCACAACTGGGGATGTTATCTGGAATTCTCTTTCAACTGTTTTATGGGTTGATGGGGAGTTGGA
                                                     |    |  | |  ||| | | |    |||     |||||||   || ||||| || |||||||| || ||||| || || || ||||||||||| |||||||||||||| ||  | ||||| || || |||||  ||||||| || ||||
-----------------------------------------------------gtctcatgatgatttttcttgtttgttgttggatttcatttc--atatagGTCGCACAAGTGCTACTGACACTACCATATTCCTTTTCACAACTTGGGATGTTATCTGGGATCATATTTCAGCTTTTCTATGGACTGATGGGAAGCTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965879|gb|GW837362.1|GW837362
EST:     GGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAG                         GTTGCCCAAGTGCTTCTCACTCTGCCCTACTCGTTTTCACAACTGGGGATG
genomic: GGCACGGCGGCTCGGTCTATGATGCCTGGTTCAGCTGTGCTTCTAATCAGgcacttatgc ... tggaatgtagGTTGCCCAAGTGCTTCTCACACTGCCTTACTCGTTTTCACAACTGGGGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatgggaaacaacggatttacgtatgctgtgtgtttattcatttggaatgtagGTTGCCCAAGTGCTTCTCACACTGCCTTACTCGTTTTCACAACTGGGGATGTTATCTGGAATTCTCTTTCAACTGTTTTATGGGTTGATGGGGAGTTGGA
                                       ttcattt  CT-rich tract
                                   tttattcattt  TA-rich tract