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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

Basic information

species Vitis vinifera
transcript Vv18s0001g02650.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
tccgac--gaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
 ||||   || |     | |           |  | || |   ||   |   |      ||||||   ||| |||    || ||  | | | |   || |||||||||| ||||| || ||||| || |||||||| || || ||||| |||||||| |||||||| ||||||||||| ||||| || || || || || ||
-ccgattggagatcggatttgtggggaaaaaaagttgggagctttggattctgttcttgatggggggatttgcttatt-tgctttcattcgatctgttgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
                   |||   |||||        ||      | | |   | |   |  ||  | |      | |||   |   |   | |   |||||||||||| ||||| || || || |||||||| ||||| ||||| |||||||| |||||||| ||||| || || ||||| || || ||||| || ||
-------------------gtaagctcccaatcttccccttcactttctcggggcca---gatctgatctgagatgaggttgacacacgacgcatgcaagGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
--tccgacgaaacaaagtgttgtattttcccacatcgg-aactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
  |  |     |    |||| | |||| |  | ||||  | |  ||||| ||  | |||    || | |   |   |   |  || |  | | | |  | ||||||||||||| || || ||||| || |||||||| || || ||||| || ||||| |||||||| ||||||||||||||||| || || || || || ||
gatttggtccgatcgggtgtgggattt-cagaaatcgacagccttttcccgtc-agacaggcaggtcctgactac-gctgttcttttgcttgatccgatgcagGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
---tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtt--tctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
   |||||             |||    | ||| |  |     |  |  |  ||        ||   ||  |   | |  ||||  | |  | | | |    ||||||||||||| || || ||||| || |||||||| || || ||||| || ||||| |||||||| ||||||||||||||||| || || || || || ||
tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctttttcggtcg-----ggcagttgctgactaggctgttattttgcttgatccggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 1
-tccg-acgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttc--ttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
 |  | ||  | || |      |   | ||  |   |   || |  || |  | | | ||     | ||  ||  |   |     ||   |||   ||    |||||||||||| ||||| ||||| || |||||||| || || || ||||||||||| || ||||| || |||||||||||||| || || ||||| || ||
gtaagcacccatcagatctccctccctcccttctctgtctctttcaccagccggatccaaccatccattcctcactcccatcacctcggctggtgcct----agGCATGGGCGCCGCCTACGGGACGGCCAAGAGCGGCGTCGGCGTCGCCTCCATGGGCGTCATGCGCCCCGAGCTCGTCATGAAGTCCATCGTCCCCGTCGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
---------tccgacgaaacaaagtg-ttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
         |  |  | | | | |||  ||     |   |   || ||   |||   ||||  |   |   |   |   |||  | |||| |    |||||      |||||||||| ||||| || ||||| || ||||| || || || ||||| |||||||| || ||||| || |||||||||||||| || || || || || ||
gagagaatttgggttggatccatgtggctgggacgtgtgagggcgaaa---tttttggtggtgaatgacatgatctccctctgtgtatgtgt---gtggctc----gcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G03470.1 (Glycine max), 3'ss of exon 1
---------------------------------------------------------------------------------------tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggg-----gcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
                                                                                          |    ||||   | |||||    ||    | | | |||| | |  | |  ||| ||        | ||| ||||  |  ||||| || |   |  ||   ||| ||||| ||||| ||||| || || ||||| |||||||| ||||| || |||||||||||| | |||||||| || ||||| ||||| || || || ||
gttcgtcactctctttttatttgtaaaattttattcaatataacgataacaataataataataatattagggtctagatctatcgtagttggttgaacagt-tattgtaaaaaccttt-ttgtacctgtcttcgattgctacagattaaaaaatgatttattctgtggctgttt-tattttatgattggtagGTATGGGAGCGGCGTATGGAACGGCGAAGAGTGGGGTGGGGGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
-tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttcttta---cagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
   |   ||     || |   ||| ||      | | |    ||   ||   |      | |  ||||     |    |    | |   | || || |   ||||||||||||| || ||||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| || ||||| ||||| || ||||| ||
aagcagtgacgttgagggcc-tatcttgttgttttgaaggactt---tgatcagcttgctcgctctttaccgatatgttaacccgaggaggtttttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
tccgacgaaacaaagtgttgtattttccc---acatcggaactgtttcctgtggaaacaaatg--gggcttttt----tcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
           |  ||     |||||| |    ||    || | | |  | ||||     ||   |  |||  |    |||   || |       ||| ||   | ||||||||||||| || ||||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||| | || |||||||| || || ||||| ||
---------gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
tccgacgaaacaaag-tgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttt---tcttggaatgtttctaatggcttctttac--agGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
        ||||  | |||||      ||    |||      |   ||  |  |     | |   ||  |   | |    |   |  | | || || |   |  |||||||||||| || ||||| || || ||||| || ||||| ||||| |||||||| |||||||| || ||||| || ||||| ||||| || ||||| ||
------ataacagcgatgttgggcaccccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaataaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggctttttt--cttggaatg--tttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
 ||   |||     ||||||     |    | ||       |   ||  ||    |  | |    |  |   | || | |   | |  ||||   |     ||||||||||||| || |||||||| || ||||| || ||||| ||||| |||||||| |||||||| || ||||| || ||||| ||||| || || || ||
-cccgtgaa---cggtgttgggcacttaagcttcaatttcctcagctagggtgcgacttcgaaactcctggacatgaactaaatgttgaatgttattgcgtcagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 1
tccgacgaaacaaagtgttgtattttcccacatcggaa-ctgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
                             |   | ||  || |||||| |   | | |||              | ||||      ||   |   ||||||||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| || ||| ||||||||||||| ||||||||||| ||||| || ||
---------------------------gtaagccagattctttttcctctttgatctaat-------------cgcaatgcgatggatcaatcgattacagGCATGGGAGCTGCCTATGGCACTGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGCGTCATGAGACCGGAGCTCGTGATGAAATCGATCGTCCCGGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
-------------------------------------------------------------------------tccgacgaaacaaagtg--ttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatg------tttctaatgg---cttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
                                                                         | | | |    |   ||     |   ||| |    | |  |  ||||||    | |     | |  ||   ||    |||       ||||| ||||    |||||| |||||||||| || |||||||| || |||||||| || || || ||||| |||||||| |||||||| ||||||||||| ||||||||||| || ||||| ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

upper sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
-------------------------------------------------------------------------tccgacgaaacaaagtg--ttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatg------tttctaatgg---cttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
                                                                         | | | |    |   ||     |   ||| |    | |  |  ||||||    | |     |    ||   ||    |||       ||||| ||||    |||||| |||||||||| || |||||||| || |||||||| || || || ||||| |||||||| |||||||| ||||||||||| ||||||||||| || ||||| ||
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110391500|gb|EC956479.1|EC956479
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110708791|gb|EE086736.1|EE086736
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|37185866|gb|CF605219.1|CF605219
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|34319370|gb|CF372124.1|CF372124
EST:     CGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGC-AAGAGGCGGGGTGGGTGTGGCCTCC
genomic: CGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGA-GCGGGGTGGGTGTGGCCTCC
EST: gi|110377352|gb|EC942415.1|EC942415
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110730142|gb|EE106882.1|EE106882
EST:     TGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|32267695|gb|CD716658.1|CD716658
EST:     TGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110426037|gb|EC992434.1|EC992434
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110411878|gb|EC977606.1|EC977606
EST:     CGCTCCCTTTTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110381895|gb|EC937947.1|EC937947
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110396283|gb|EC961964.1|EC961964
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|34416192|gb|CF414946.1|CF414946
EST:     TTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTNCA
genomic: TTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110384794|gb|EC949256.1|EC949256
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110726998|gb|EE103283.1|EE103283
EST:     TGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|37185852|gb|CF605205.1|CF605205
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110369423|gb|EC933583.1|EC933583
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110731924|gb|EE106771.1|EE106771
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|32269782|gb|CD718941.1|CD718941
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|87585283|gb|DY474064.1|DY474064
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110401615|gb|EC968230.1|EC968230
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110372769|gb|EC936958.1|EC936958
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGGCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110707377|gb|EE083726.1|EE083726
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110707720|gb|EE084441.1|EE084441
EST:     TGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|18458853|gb|BM437131.1|BM437131
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
EST: gi|110374338|gb|EC939015.1|EC939015
EST:     CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCAT                         GCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA
genomic: CGCTCCCTTCTTCGGCTTCCTTGGCGCCGCTGCCGCCCTTGTTTTCTCATgtaaatacct ... ttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
                                   ttctaat  putative branch site (score: 2)
                                            cttctttac  putative PPT
                   ttttttctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccgacgaaacaaagtgttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatgtttctaatggcttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - -aaacaaa
- - - - - - - - - - - - ttcccac
- - - - - - - - - - - - - - - - - - - - - ttcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaatgg