1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtgaggtcgattatttattgatgtttaagaatttcaaattattggttttgagaaaagtttggtcagttaattgattctgttttaacaaattaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCAGAGACAGGAAGTACCCTAATGGAGCTAGGTCTAATAGGGCAACCAGGCA
species | Vitis vinifera |
transcript | Vv18s0001g01820.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TATCATCGCCGACGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTG GACTATCTAAATTGAAGACAGGEST: gi|161720508|gb|FC070907.1|FC070907
genomic: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTGgtatcaaacc ... ttaaatgcagGACTATCTAAATTGAAGACAGG
EST: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTG GACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCAEST: gi|161716141|gb|FC068060.1|FC068060
genomic: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTGgtatcaaacc ... ttaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCA
EST: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTG GACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCAEST: gi|161720743|gb|FC070650.1|FC070650
genomic: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTGgtatcaaacc ... ttaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCA
EST: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTG GACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCAEST: gi|71860524|gb|DT009579.1|DT009579
genomic: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTGgtatcaaacc ... ttaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCA
EST: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTG GGCTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCAEST: gi|71862727|gb|DT011782.1|DT011782
genomic: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTGgtatcaaacc ... ttaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCA
EST: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTG GGCTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCA
genomic: TATCATCGCCGAGGTCGATGTCTACAAGTGGGACCCCGAGGATTTGCCTGgtatcaaacc ... ttaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCA
gttttgagaaaagtttggtcagttaattgattctgttttaacaaattaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCAGAGACAGGAAGTACCCTAATGGAGCTAGGTCTAATAGGGCAACCAGGCA
ttttaac putative branch site (score: 2)
ttaattgattctgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgaggtcgattatttattgatgtttaagaatttcaaattattggttttgagaaaagtttggtcagttaattgattctgttttaacaaattaaatgcagGACTATCTAAATTGAAGACAGGAGATAGGCAATGGTTCTTTTTTAGCCCCAGAGACAGGAAGTACCCTAATGGAGCTAGGTCTAATAGGGCAACCAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
ggtgagg
- - - - - - - - - - - - - - - - - -caaatta
- - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa