Sequence
atgc intronic sequence ATGC exonic sequence...gagagagggactgttatttggttgacttactgtttcttaaagtttgttatagttaagttcctttctctagttctgaactaactttagggtccaatgacagGTGTGGTTCAGCAATGTACCCCATACACGACTGGTTGAAGATAAAGGGGGCCAGAATTGGATATCAATAAAAGGTGATAAATTTGTATTTCCAGGAGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA14G24900.1 (Glycine max), 3'ss of exon 1
--gagagagggactgttatttggttgacttactgtttcttaaagtttgttatagttaagttcctttctctagt---tctgaactaactttagggtccaatgacagGTGTGGTTCAGCAATGTACCCCATACACGACTGGTTGAAGATAAAGGGGGCCAGAATTGGATATCAATAAAAGGTGATAAATTTGTATTTCCAGGAGGTG
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ttgatttagcaaac-tcatcaaatttag--attgtgtcgtctggcacttttcaattggtttcgattgggaagaaagcattttctaagtt--atatgcaattacagGTTTGGTTCAGTAATGTACCCCATACACGTCTAGTCGAGGATAAAGGCGGTCAAAATTGGATATCAATAAAGAAGGATAAATTTGTTTTTCCTGGTGGTG
upper sequence: Vv18s0001g01600.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA13G09520.1 (Glycine max), 3'ss of exon 1
gagagagggactgttatttggttgacttactgtttcttaaagtttgttatagttaagttcctttctctagttctgaactaactt--tagg----gtccaatgacagGTGTGGTTCAGCAATGTACCCCATACACGACTGGTTGAAGATAAAGGGGGCCAGAATTGGATATCAATAAAAGGTGATAAATTTGTATTTCCAGGAGGTG
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------gattttacaaactcttgaaatttagattttgtgtcatttgacacttttcaattggtttggattgggaagaaagggttttctaagttatatgcaattacagGTTTGGTACAGTAATGTACCCCATACACGTCTAGTCGAGGATAAAGGTGGTCAAAATTGGATATTAATAAAGAGGGATAAATTTGTTTTTCCTGGTGGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187347|gb|CF606700.1|CF606700EST: ACAAGCCTCGGATTCCTTGGCCGGCAAGTAGAGATGAG GTGTGGTTCAGCAATGTACCCCATACACGACTGGTTGAAGATAAAGGGGGC
genomic: ACAAGCCTCGGATTCCTTGGCCGGCAAGTAGAGATGAGgtaatctgaa ... ccaatgacagGTGTGGTTCAGCAATGTACCCCATACACGACTGGTTGAAGATAAAGGGGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttatagttaagttcctttctctagttctgaactaactttagggtccaatgacagGTGTGGTTCAGCAATGTACCCCATACACGACTGGTTGAAGATAAAGGGGGCCAGAATTGGATATCAATAAAAGGTGATAAATTTGTATTTCCAGGAGGTG
aactaac putative branch site (score: 1)
taacttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagagagggactgttatttggttgacttactgtttcttaaagtttgttatagttaagttcctttctctagttctgaactaactttagggtccaatgacagGTGTGGTTCAGCAATGTACCCCATACACGACTGGTTGAAGATAAAGGGGGCCAGAATTGGATATCAATAAAAGGTGATAAATTTGTATTTCCAGGAGGTG
- - - - - - - - - tggttga
- - - - - - - - - - - - - - -ctgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaac