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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatccaaaaaaaaaaaaggtaacaaatgtgatcgtttggggtgaatggaacacagaaaggataatgctgagttgttgaaaggcctttttctttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCCAACTGGTACGCACCATGTAGGAAATTCACCCAAGTCCTGGCCGGCGCCT

Basic information

species Vitis vinifera
transcript Vv18s0001g01030.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711973|gb|EE089062.1|EE089062
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110713352|gb|EE089200.1|EE089200
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110701836|gb|EE079864.1|EE079864
EST:     -CTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110700953|gb|EE078058.1|EE078058
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|156736462|gb|EV240583.1|EV240583
EST:     ACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: ACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110684953|gb|EE062820.1|EE062820
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110690534|gb|EE067717.1|EE067717
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|30129668|gb|CB915007.1|CB915007
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|161716496|gb|FC066194.1|FC066194
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110418424|gb|EC984579.1|EC984579
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110713786|gb|EE090012.1|EE090012
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110713551|gb|EE089581.1|EE089581
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|30134679|gb|CB920017.1|CB920017
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
EST: gi|110700220|gb|EE078008.1|EE078008
EST:     TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAG                         GTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC
genomic: TCTTGGCCTCCACACACCGTGATTTTCTGCTCTCTCCCACCGGACAACAGgtcctccctc ... tttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaacacagaaaggataatgctgagttgttgaaaggcctttttctttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCCAACTGGTACGCACCATGTAGGAAATTCACCCAAGTCCTGGCCGGCGCCT
                                     cctttttctttgttgc  CT-rich tract
                                       tttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aatccaaaaaaaaaaaaggtaacaaatgtgatcgtttggggtgaatggaacacagaaaggataatgctgagttgttgaaaggcctttttctttgttgcagGTTAAAGTGTCGGAGCTGAATGACAAGGTTATTGGGCTTTACTTCTCAGCCAACTGGTACGCACCATGTAGGAAATTCACCCAAGTCCTGGCCGGCGCCT

aatccaa
- - -aaaaaaa
- - - - - - - - - gtaacaa
- - - - - - - - - - - - - - - - - - - - -tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - -acagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgctg