1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgggaccgagaaaataattgtagtcagagaatttctattcctatatatggtagcttatgagttttgatgtgttgattttttgctttggaaattgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG
species | Vitis vinifera |
transcript | Vv18s0001g00480.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|71880141|gb|DT029196.1|DT029196
genomic: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: GCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|352782455|gb|FQ470358.1|FQ470358
genomic: GCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|161714038|gb|FC064113.1|FC064113
genomic: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: ATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|352765070|gb|FQ473718.1|FQ473718
genomic: ATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|352773730|gb|FQ472512.1|FQ472512
genomic: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|352777695|gb|FQ466748.1|FQ466748
genomic: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|352781730|gb|FQ469028.1|FQ469028
genomic: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTEST: gi|352777783|gb|FQ466836.1|FQ466836
genomic: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
EST: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAG ACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
genomic: TAAGATCTCTTGCATCGATCATCTCGGTCTTCATTTCTCGCAAAGATCAGgtgaaaatct ... attgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCT
tatggtagcttatgagttttgatgtgttgattttttgctttggaaattgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG
tgttgat putative branch site (score: 4)
ttgtttc putative PPT
ttgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggaccgagaaaataattgtagtcagagaatttctattcctatatatggtagcttatgagttttgatgtgttgattttttgctttggaaattgtttcagACAAGTTATTTGAGCATCTAGGTTCCAGCGAACTTCACTTTCATTCTCTCTCATGGCG
- - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - gcttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgtg