1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgcagataataagatcattatggtaagctaagctacttcctaatgatacagaagctgttctttggtttgtaatgctcctttgccttttgattccaacagGTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAG
species | Vitis vinifera |
transcript | Vv18s0001g00110.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CATAGAGTTCGAATCCAGGCTATGCCTTCAATGCCTTTTGCCTCGCCTCA GTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAGEST: gi|294967101|gb|GW839976.1|GW839976
genomic: CATAGAGTTCGAATCCAGGCTATGCCTTCAATGCCTTTTGCCTCGCCTCAgtgagttccg ... attccaacagGTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAG
EST: CATAGAGTCCGAATCCAGGCTATGCCTTCAATGCCTTTTGCCTCGCCTCA GTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAGEST: gi|161709993|gb|FC060580.1|FC060580
genomic: CATAGAGTTCGAATCCAGGCTATGCCTTCAATGCCTTTTGCCTCGCCTCAgtgagttccg ... attccaacagGTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAG
EST: CATAGAGTTCGAATCCAGGCTATGCCTTCAATGCCTTTTGCCTCGCCTCA GTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAG
genomic: CATAGAGTTCGAATCCAGGCTATGCCTTCAATGCCTTTTGCCTCGCCTCAgtgagttccg ... attccaacagGTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAG
gatacagaagctgttctttggtttgtaatgctcctttgccttttgattccaacagGTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAG
ttttgat putative branch site (score: 4)
tttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcagataataagatcattatggtaagctaagctacttcctaatgatacagaagctgttctttggtttgtaatgctcctttgccttttgattccaacagGTCTCATTTTGTTTCCAAACAAGAAAAGTTCTATCCCCGCTGCACTCCAAGACATTCTGGTCCACAGTCCCGTGATACTCCACCAAAAAGAG
-tgcagat
- - - - aataaga
- - - - - - - - - - - - - - - - - - - -cctaatg
- - - - - - - - - - - - - - - - - - - - - - - atacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg