Sequence
atgc intronic sequence ATGC exonic sequencegtaagattgatgagagttgaaatttcttatttgtttgtttgttggtttggcaaatagtttgaaatataatattggtaatgaagGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 1
---------------------------------------------------------------------------------------------------gtaagattgatgagagttgaaatttcttatttgtttgtttgttggtttggcaaatagtttgaaatataatattggtaatgaagGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAAT
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gtaaggacacttctctttctttttcccactcatgcctttggtgttttcatttccctcttttatgtcatggccttttgcatttctcttcatgaacagttaaaaaaaaaattcatacttgcacccttctaattttgtggtccctctctctctttttctttctctgtgt--ttgttgtttttcagTATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAGAGGTTGCAGTTGAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTCCAGAAC
upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G34350.1 (Glycine max), 3'ss of exon 1
-------------------------------------------------------------------------------------------gtaagattgatgag-agttgaaatttcttatttg------tttgtttgt-tggtt----tggcaaatagtttgaaatataatattggtaatga-agGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAAT
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gtaagaaccattctctttttattttttattttatttcccattcatgcctttggtgttttcatttccttcttttatgtcatggccttttgcatttctcttcatgaacagttaaaaaatcatacttgcacccttctaattatgtggtccctctctctttttgttctttctatgtgattggtgttttcagGATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAGAGATTGCAGTTGAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTCCAGAAC
upper sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G73360.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagattgatgagagt-tgaaatttcttat-ttgtttgtttgttgg-tttggcaaatagtttgaaatataatattggtaatgaagGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAAT
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---------gtactactctgcaatcccttctcttttttatcttttggactctgttttcattttgtaat-cgttgaaacttggacagGAGTTTCAAGGAGTGTCCTCATCCAGATGAGAAACAGAGGAACCAGCTTAGCAGAGAATTGGGTTTGGCTCCAAGACAAATCAAGTTCTGGTTTCAGAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttgtttgtttgttggtttggcaaatagtttgaaatataatattggtaatgaagGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAAT
aaatagtttgaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagattgatgagagttgaaatttcttatttgtttgtttgttggtttggcaaatagtttgaaatataatattggtaatgaagGATGTTCAAGGAGTGTCCTCACCCAGATGAGAAGCAGAGGCTGCAGTTGAGCAGAGAGTTGGCTTTGGCTCCCAGGCAGATCAAATTTTGGTTTCAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA