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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatctatatttctcttaatcgaatttattttcgcaagaaacagatgggaattgaatcatgaatgatgttgtgtatttggttccgcagTTGAGCATACAGAAGGAGGAGGCTAAGAAGAAGGAAGTTCACATCGACGAAAATGTCCCTGCGCCGACGCCTCGCTCCAACTGTTCC

Basic information

species Vitis vinifera
transcript Vv17s0000g10130.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os04g40740.1 (Oryza sativa), 3'ss of exon 1
---------gtataatctatatttctcttaatcgaatttattttcgcaagaaacagatgggaattgaatcatgaatg-atgttgtgtatttggttccgcagTTGAGCATACAGAAGGAGGAGGCTAAGAAGAAGGAAGTTCACATCGACGAAAATGTCCCTGCGCCGACGCCTCGCTCCAACTGTTCC
          | | |  |   |||    |       | |  | |    |        |      ||| | ||  ||      ||  |||||      ||||  ||||||||| ||||||||||||||||||||||| || || || || || ||||||||||| ||  | || || ||||| || || 
cagctatggattttagatgagtttggtgttgctatgtgtgctgtt-tgaactttttttttttgctgatttatctatttgctctggttatttttcattgcagAGGAGCATACAAAAGGAGGAGGCTAAGAAGAAGGAGGTACATATAGATGAGAATGTCCCTGCACCATCTCCCCGGTCCAATTGCTCG

upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G36770.1 (Glycine max), 3'ss of exon 1
gtataatctatatttctcttaatcgaatttattttcgcaagaaacagatgggaattgaatcatgaatgatgttgtgtatttggttccgcagTTGAGCATACAGAAGGAGGAGGCTAAGAAGAAGGAAGTTCACATCGACGAAAATGTCCCTGCGCCGACGCCTCGCTCCAACTGTTCC
                   || ||   | ||| | || |    |||  |   ||   ||   ||||        ||||||||    | ||||||||||| || || ||||| |||||||||||||| |||||| ||||||| || || || |||||  | |||||||||||||| |||
------------------gtactctc-tctatctccg-atctcacacctcaaaacaaaacattgaaa-----cttgtatttga---cacagTTGAGCATTCAAAAAGAGGAAGCTAAGAAGAAGGAGGTTCACGTCGACGACAACGTTCCCGCGCCTTCTCCTCGCTCCAACTGCTCC

upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G18170.1 (Glycine max), 3'ss of exon 1
-----------gtataatctatatttctcttaatcgaattt-------attttcgc-aagaaacagatgggaattgaatcatgaatgatgttgtgtatttggttc----cgcagTTGAGCATACAGAAGGAGGAGGCTAAGAAGAAGGAAGTTCACATCGACGAAAATGTCCCTGCGCCGACGCCTCGCTCCAACTGTTCC
            |||  ||||  ||    |  |||  ||||       | |||| | ||| || |  |  | |   |   |  ||  |     || |  | ||      | ||||||||||| || || ||||| |||||||||||||| || ||  ||||||| || || || |||||  | |||||||||||||| || 
gtatgcttttgctattctctagtttatcttcgatcacatttccatttcactttcacgaagtaataagtaagcaaaaacctaaaaacaaaacaatgaaacttgtatttgacacagTTGAGCATTCAAAAAGAGGAAGCTAAGAAGAAGGATGTCCAAGTCGACGACAACGTTCCCGCGCCTTCTCCTCGCTCCAACTGCTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaagaaacagatgggaattgaatcatgaatgatgttgtgtatttggttccgcagTTGAGCATACAGAAGGAGGAGGCTAAGAAGAAGGAAGTTCACATCGACGAAAATGTCCCTGCGCCGACGCCTCGCTCCAACTGTTCC
                aattgaat  TA-rich tract