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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaaataactgaacatgaactgcttcatagccatgagatgtttgtagtctagtttctgcacaataagggcttttctctgtgatttcatgatcttataatccatgtgcatttagcaaattgaactgaacaaatcaacaaaactaacctgtttgggatcagatgatcgagtgttctagtgtttttgctggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCAACTGGATGTCTCACACTGGCCTTGACACTGGCTCCTGATGATGACAGAG

Basic information

species Vitis vinifera
transcript Vv17s0000g10060.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351033945|gb|FQ463000.1|FQ463000
EST:     GCAGCACCATTCANGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAG                         GCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
genomic: GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGgtactgaaat ... tggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
EST: gi|349825518|gb|FQ419435.1|FQ419435
EST:     GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAG                         GCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
genomic: GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGgtactgaaat ... tggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
EST: gi|110377120|gb|EC942180.1|EC942180
EST:     GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAG                         GCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
genomic: GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGgtactgaaat ... tggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
EST: gi|351035288|gb|FQ459555.1|FQ459555
EST:     GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAG                         GCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
genomic: GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGgtactgaaat ... tggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
EST: gi|351019806|gb|FQ439623.1|FQ439623
EST:     GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAG                         GCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
genomic: GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGgtactgaaat ... tggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
EST: gi|110691564|gb|EE069810.1|EE069810
EST:     GCACCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAG                         GCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA
genomic: GCAGCACCATTCAGGAGCTTGGTATCAAGAGTATTACCAGCTTCCTACAGgtactgaaat ... tggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaacctgtttgggatcagatgatcgagtgttctagtgtttttgctggtttgcagGCATTGCTGAAGAAAGGTGTGAAGTACCTTGTGGTCCAAGGTCTGCCACCAACTGGATGTCTCACACTGGCCTTGACACTGGCTCCTGATGATGACAGAG
 aactaac  putative branch site (score: 1)
                                      tttttgct  putative PPT
                                    tgttttt  TA-rich tract