1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatgaaataggttagttaccaaacaagcccttaataattttgaaagctctgatcaccaaaggaaacaattgtagtgaagctgttttatgatgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACTTGCAGCGCTATGGAGTGATTAATTCGAAAAAGGTAGCTCAAGTAATGG
species | Vitis vinifera |
transcript | Vv17s0000g09690.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|30253100|gb|CB970651.1|CB970651
genomic: CTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|110380339|gb|EC945595.1|EC945595
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: TTTCAAGATGGAG CGATTCTTTTCTGGAAGGGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|110731607|gb|EE106167.1|EE106167
genomic: TTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|46917807|gb|CN547136.1|CN547136
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|110726896|gb|EE103078.1|EE103078
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|110688221|gb|EE066525.1|EE066525
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|33407775|gb|CF213402.1|CF213402
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCCAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|110405103|gb|EC970636.1|EC970636
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|161713127|gb|FC062485.1|FC062485
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACEST: gi|46917806|gb|CN547135.1|CN547135
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
EST: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAG CGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
genomic: CCCCAAATCCTAGGTTCCTAACGGGGAACTCTCTCGTTTTCAAGATGGAGgtgcgtatcc ... tgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCAC
gctctgatcaccaaaggaaacaattgtagtgaagctgttttatgatgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACTTGCAGCGCTATGGAGTGATTAATTCGAAAAAGGTAGCTCAAGTAATGG
ctctgat putative branch site (score: 4)
ttttatgatgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaaataggttagttaccaaacaagcccttaataattttgaaagctctgatcaccaaaggaaacaattgtagtgaagctgttttatgatgattaacagCGATTCTTTTCTGGAAGTGGGATCAATAAGAATAAAGCAATGGTGGAGCACTTGCAGCGCTATGGAGTGATTAATTCGAAAAAGGTAGCTCAAGTAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
aatgaaa
- - - - - - - - - ccaaaca
- - - - - - - - - - - - - -cccttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tcaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaat