Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggagctgttcggtttggaatttgttgattttggggatttgggggtatatcatatctgggtgtttgcttgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT

Basic information

species Vitis vinifera
transcript Vv17s0000g09680.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G011129_T01 (Zea mays), 3'ss of exon 1
------------gtatggagctgttcggtttggaatttgttg-attttggggatttgggggtatatcatat---ctgg---gtgtttgcttgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT
             | | | | | |  | ||| |  ||         |||   |   || | |   |||| |   |||    |   ||  |   |  |||||| |||||||| || || || |||  |||||||||||| ||||||||  | ||||| ||||| || || || || ||||||||||| ||||| ||||| |
cattgtttgatcttttaggggtatatgttttcgtgttccccctgggttgaaaaaaaggagcttgctcatttgttctgaaatggactttgtcactgcgcagGTCATTTACAACAGAGAAACAGATCAAAGTCGTGGGTTTGGGTTTGTCACTATGAGCACTGTCGAGGAGGCTGAGAAGGCTGTGGAGATGTTCCATCGCT

upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G18470.1 (Glycine max), 3'ss of exon 1
--------------------------------------------gtatggagctgttcggtttggaatttgttgattttggggatttg-----ggggtatatcatatctgggtgtttgcttgtt-ttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT
                                             | || |  | |     |   | | |||||   |||   | |||      | ||      |   |   | |||  ||||| ||  |||||||||| || ||||| |||||    ||||| ||||| ||||||||| | |||||||||||||||||||| ||||  |||||||| |  ||  | || |
gtcagaaacaaagagagagaggctctttaccttctcgtgtttcaatttgaatttatgttaatgttattgtgttggggttgaaaacttgaaatgagcgtgcggtgtggttctttctttttttgttattttagGTTATTTATAACAGGGAAACTGACCAGAGTCGCGGGTTTGGGTTTGTGACGATGAGTACTGTTGAAGAAGCTGAAAGCGCTGTGGAGAAATTCAACCGCT

upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G36420.2 (Glycine max), 3'ss of exon 1
---------------------------------gtatggagctgttcggtttggaatt-tgttgattttggggatttgggggt---atatcatatctgggtgtttgcttgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT
                                    |   |   |||  |||| | || |||| | | |     | |  ||||   | |    |  ||   || || |    ||  |||||||||| |||||||| |||||    ||||| || || ||||||||| | |||||||| ||||||||||| || || || ||||| |  ||   |||||
gtcagagagagagagagagagagaggctctttaccttctcgtgtttcaatttgaatttctgttaaatattattttgttagggttggaaacttgaaatgaacgtgtggtgtggttttagGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGTTTTGGGTTTGTGACGATGAGTACCGTTGAAGAAGCTGAGAACGCCGTGGAGAAATTCAGTCGTT

upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G50250.1 (Arabidopsis thaliana), 3'ss of exon 1
------gtatggagctgttcggt--ttggaatttgttgattttggggatttgggggtatatcatatct-gggtgtttgcttg----------ttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT
        ||||  ||| |  |   |  |  ||| | | || |  || ||   ||    || || | |   | || |||||           ||||||||||||| ||||||||||| ||||||  ||||||||| || ||||||||  |||||||||| ||||||||||| || || ||||| || | |||  || |||
tgtgtttcatgggtctgctttgaaatctggttttatagtttatttggcttaaaggaatgattatgtttcatgggtctgctttgaaatctggtttttgcagGTTATATACAATAGGGACACTGATCAAAGTCGTGGATTTGGGTTTGTAACAATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTTGAGAAGTTCAATAGTT

upper sequence: Vv17s0000g09680.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT4G24770.1 (Arabidopsis thaliana), 3'ss of exon 1
----------gtatggagctgttcggtttggaatttg---ttgattttggggatttgggggtatatcatatctgggtgtttg----cttgt--tttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT
            ||    || || | | |    |||    ||  ||   | |||   |  ||   || |  || | | ||||    |||||  ||   ||||||| ||||||||||| |||||    ||||||||||| || |||||| |||||||| |||| || ||||| || |  |||||||| | |||  | ||||
atatctgttgacattatacttttggttctctcttttttatttagttcaagagataatgttgttagtcctgacttgttctttgaattcttgtggttgtaagGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTTGGATTTGTGACAATGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351054213|gb|FQ450295.1|FQ450295
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351054809|gb|FQ462839.1|FQ462839
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351045782|gb|FQ440967.1|FQ440967
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351055043|gb|FQ440382.1|FQ440382
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351057237|gb|FQ450944.1|FQ450944
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351036322|gb|FQ458697.1|FQ458697
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349820513|gb|FQ404008.1|FQ404008
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGCGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351033858|gb|FQ447896.1|FQ447896
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|352798839|gb|FQ478474.1|FQ478474
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351054296|gb|FQ450378.1|FQ450378
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|352795680|gb|FQ480268.1|FQ480268
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351053474|gb|FQ459221.1|FQ459221
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349819891|gb|FQ404613.1|FQ404613
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351057301|gb|FQ453983.1|FQ453983
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351040658|gb|FQ438202.1|FQ438202
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAAGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349823662|gb|FQ415072.1|FQ415072
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349822741|gb|FQ398128.1|FQ398128
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTAGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349823242|gb|FQ400221.1|FQ400221
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351037105|gb|FQ456938.1|FQ456938
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351048091|gb|FQ441263.1|FQ441263
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351052228|gb|FQ452382.1|FQ452382
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349828684|gb|FQ418419.1|FQ418419
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351048048|gb|FQ441220.1|FQ441220
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|37188675|gb|CF608024.1|CF608024
EST:     GAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: GAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351044143|gb|FQ452816.1|FQ452816
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351053520|gb|FQ459267.1|FQ459267
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351039421|gb|FQ461288.1|FQ461288
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351041648|gb|FQ455858.1|FQ455858
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|110380242|gb|EC945490.1|EC945490
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351047375|gb|FQ451887.1|FQ451887
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349822007|gb|FQ408336.1|FQ408336
EST:     ATATGCTGGCTAGGCTTTTTGAGCATGCTGGGTTTGTGGAGATCTCATAA                         GTTATTTACAAT
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAAT
EST: gi|351045542|gb|FQ440727.1|FQ440727
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351017609|gb|FQ435962.1|FQ435962
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351044574|gb|FQ443105.1|FQ443105
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351056003|gb|FQ453464.1|FQ453464
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349807897|gb|FQ402288.1|FQ402288
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351039011|gb|FQ457686.1|FQ457686
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351046072|gb|FQ441455.1|FQ441455
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351052006|gb|FQ450697.1|FQ450697
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351033487|gb|FQ462138.1|FQ462138
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351035016|gb|FQ458373.1|FQ458373
EST:     AGAGGCTGGATAGGCTTTTTGAGCAGGCTGAGGTTGTGGAGATCGCAGAG                         GTTATTTACAATACGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|352786081|gb|FQ481876.1|FQ481876
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351033638|gb|FQ462168.1|FQ462168
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|349809071|gb|FQ407520.1|FQ407520
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|161715223|gb|FC065803.1|FC065803
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTG
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTG
EST: gi|351054970|gb|FQ440309.1|FQ440309
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351038881|gb|FQ457556.1|FQ457556
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351042300|gb|FQ442767.1|FQ442767
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351055671|gb|FQ452136.1|FQ452136
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTT-GTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|351041695|gb|FQ455905.1|FQ455905
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
EST: gi|110690700|gb|EE068090.1|EE068090
EST:     AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAG                         GTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA
genomic: AGAGGCTGGCTAGGCTTTTTGAGCAGGCTGGGGTTGTGGAGATCGCAGAGgtatggagct ... tgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgattttggggatttgggggtatatcatatctgggtgtttgcttgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT
 tgttgat  putative branch site (score: 4)
                                           cttgtttt  putative PPT
                      tatatcatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggagctgttcggtttggaatttgttgattttggggatttgggggtatatcatatctgggtgtttgcttgttttgcagGTTATTTACAATAGGGAGACTGATAGAAGTCGTGGGTTCGGGTTTGTGTCAATGAGTACTGTTGAAGAAGCCGAAAAGGCTGTGGATATGTTTCATCGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC