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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttttttctttctttctttccttttttttttttcttctcattcaattcacttaatttatctgttgagctcgcatgttagttttttgtaagtgaattgttttccaaattgtccccgtcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAAATTGGCAACAAGATTGTGCAGTTTCGAGACCAATGACGGGGTTGTGGCC

Basic information

species Vitis vinifera
transcript Vv17s0000g09390.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827639|gb|FQ422507.1|FQ422507
EST:     GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAAT                         AGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
genomic: GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAATgtgagttttt ... tcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
EST: gi|30251442|gb|CB969175.1|CB969175
EST:     CGAACCCCGTAGAAATCCATTAAGATCAAT                         AGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
genomic: CGAACCCCGTAGAAATCCATTAAGATCAATgtgagttttt ... tcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
EST: gi|349825024|gb|FQ415571.1|FQ415571
EST:     GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAAT                         AGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
genomic: GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAATgtgagttttt ... tcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
EST: gi|349816266|gb|FQ403762.1|FQ403762
EST:     GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAAT                         AGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
genomic: GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAATgtgagttttt ... tcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
EST: gi|110382393|gb|EC939358.1|EC939358
EST:     CCCCGTAGAAATCCATTAAGATCAAT                         AGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
genomic: CCCCGTAGAAATCCATTAAGATCAATgtgagttttt ... tcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
EST: gi|349829899|gb|FQ422212.1|FQ422212
EST:     GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAAT                         AGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
genomic: GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAATgtgagttttt ... tcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
EST: gi|110703698|gb|EE080772.1|EE080772
EST:     GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAAT                         AGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA
genomic: GGTTTTAGATTCTTCATCGACGAACCCCGTAGAAATCCATTAAGATCAATgtgagttttt ... tcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgttagttttttgtaagtgaattgttttccaaattgtccccgtcgaattcagAGAAATGCAATCATTTCGTGGAGGCATTCGCTCGAAGATTGTTCATTTCAAATTGGCAACAAGATTGTGCAGTTTCGAGACCAATGACGGGGTTGTGGCC
                                       tccccgtc  CT-rich tract
     ttagttttttgtaa  TA-rich tract