Sequence
atgc intronic sequence ATGC exonic sequencegtaattaatttctcttcttcaccttccacattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G36110.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------gtaattaatttctcttcttcaccttccacattttcatctttcttggtagttg-------------------gtaaattgttttgatggtgatctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCAT
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gtaacgtattatattctacctcctttcctttttataagaaacaagttatagtgtattatttaaatttaattaacactcattctctcttctcattaaaagaaaagaaaagaaaagaaaagaaaaaccctcactttatgaatattgcagGACTCCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCTCAACAAGAGGAGGATCTTAT
upper sequence: Vv17s0000g09080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G18830.1 (Glycine max), 3'ss of exon 1
---------------------------------------------------------------------------------------gtaattaatttctcttcttcaccttccacattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCAT
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gtaacatattatatattattattattattatttagcccttgtccggtgcttgattttggtccgtgactaagtttgactaggtagtggatgcttgatttcatttattt-tcttcaatatattctctcttcttattaaaagaaaataaactcactttatgaatattgcagGACTCCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTACTTGAGGCCTGATTTGAAGAGAGGAATGTTCTCTCAACAAGAGGAGGATCTTAT
upper sequence: Vv17s0000g09080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G02550.1 (Glycine max), 3'ss of exon 1
-----gtaattaatttctcttcttcaccttcca-cattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCAT
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gtataacaacttacaacttttcttctctttcaaatgaaaaaaacatgggagagagcttcttaactcatttcatgatgaa-tttgcagGATTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGCATGTTCTCACAGCAGGAGGAGGATCTTAT
upper sequence: Vv17s0000g09080.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G09310.1 (Glycine max), 3'ss of exon 1
--------------gtaattaatttctcttcttc----accttccacattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCAT
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gtaacaacttgtatattcttaatttcttctcttccattacttcaaacgaaaaaaacatgggagagagcttcttaactcattccatggtgaa-tttgcagGACTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGCATGTTCTCACAGAAAGAGGAGGATCTAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710223|gb|FC058946.1|FC058946EST: CATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTG GTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGA
genomic: CATAACCAGATTTGGTGTTGGGTGTTGGAGTTCAGTTCCCAAGCTGGCTGgtaattaatt ... atctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCAT
ttttgat putative branch site (score: 4)
tctttgt putative PPT
taaattgttttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaattaatttctcttcttcaccttccacattttcatctttcttggtagttggtaaattgttttgatggtgatctttgtagGTTTGCAGAGGTGCGGAAAGAGTTGCAGATTGAGATGGATTAACTATTTGAGACCCGACCTTAAGAGAGGAATGTTCTCTCAGCAAGAGGAGGATATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT