1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gcaatttcttgtcttaatggtgttttctatgtgaatttggtattttcttgatggctctaaaggttcaggatctgggtggttgtttttctcctgcagAGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCTTTTGATCATCCTCAGCTAAGAGGAAAGAAACCATTG
species | Vitis vinifera |
transcript | Vv17s0000g08870.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCAGAGCCTATCTCAGGAAGATCAACAAGCCTGCAGTCAAGACAATTCAG AGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCTEST: gi|56409096|gb|CX017348.1|CX017348
genomic: TCAGAGCCTATCTCAGGAAGATCAACAAGCCTGCAGTCAAGACAATTCAGgcaatttctt ... tctcctgcagAGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCT
EST: TCAGAGCCTATCTCAGGAAGATCAACAAGCCTGCAGTCAAGACAATTCAG AGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCTEST: gi|37187425|gb|CF606778.1|CF606778
genomic: TCAGAGCCTATCTCAGGAAGATCAACAAGCCTGCAGTCAAGACAATTCAGgcaatttctt ... tctcctgcagAGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCT
EST: TCAGAGCCTATCTCAGGAAGATCAACAAGCCTGCAGTCAAGACAATTCAG AGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCT
genomic: TCAGAGCCTATCTCAGGAAGATCAACAAGCCTGCAGTCAAGACAATTCAGgcaatttctt ... tctcctgcagAGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCT
attttcttgatggctctaaaggttcaggatctgggtggttgtttttctcctgcagAGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCTTTTGATCATCCTCAGCTAAGAGGAAAGAAACCATTG
ctctaaa putative branch site (score: 3)
ttgtttttctcctgc putative PPT
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaatttcttgtcttaatggtgttttctatgtgaatttggtattttcttgatggctctaaaggttcaggatctgggtggttgtttttctcctgcagAGTCCTGATGGTGATGTGATAGATTGTGTTTTATCTCATCTCCAACCAGCTTTTGATCATCCTCAGCTAAGAGGAAAGAAACCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA