Sequence
atgc intronic sequence ATGC exonic sequencegtgtgtgtttgtgtgtgtgtcgattgtcgattttagagcttggagggtcttgagatttgggttttttttttttcttttctgaaaacgatgggaacggaattttcagTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g07580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G01730.1 (Glycine max), 3'ss of exon 1
gtgtgtgtttgtgtgtgtgtcgattgtcgattttagagcttggagggtcttgagatttgggttttttttttttcttttctgaaaacgatgggaacggaattttcagTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGAT
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----gtaacccggcgt-tgcgaattgtatgtctgtgaatttg-----tttgggaaattgagattgtttatgaagtgttgtgtgtgtttt----------ttttcagTGACGGTTGTGGAGAGTGGAACGCGTGCTCTTCAGTATCTGGGGTTGGACGGAGGGAACAGTTCTCTCGGGTTTGAT
upper sequence: Vv17s0000g07580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G10170.3 (Glycine max), 3'ss of exon 1
gtgtgtgtttgtgtgtgtgtcgattgtcgattttagagcttggagggtcttgagatttgggttttttttttttcttttctgaaaacgatgggaacggaattttcagTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGAT
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----gtaacccggtgt-tgcgattcacctgtctgtgaatttgtttgg----gaaaattgagattggttctgaagtgttgtgtg-----tgtgtgtttgtttttcagTGACGGTTGTGGAGAGTGGAACGCGCGCTCTTCAGTATCTTGGGTTGGAGGGAGAGAACGGTTCTCTTGGGTTTGAT
upper sequence: Vv17s0000g07580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G34820.1 (Glycine max), 3'ss of exon 1
gtgtgtgtttgtgtgtgtgtcgattgtcgattttagag-cttggagggtcttgagatttgggttttttttttttcttttctgaaaacgat----gggaacggaatttt-cagTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGAT
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------------------gttaagagccaaagatggagactttgagtgtctttttttttttttttttttctcttgggttctgatggttgttcttggatatgggttttggcagTGACGGTGGTGGAGAGTGGAAGCAGGGCTCTGCAGTATCTGGGGTTGGATGGAGAAAAAAGTTCCATTGGTCTTGAT
upper sequence: Vv17s0000g07580.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G19050.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------gtgtgtgtttgtgtgtgtgtcgattgtcgattttagagcttggagggtcttgagatttg-------ggttttttttttttcttttctgaaaacga----tgggaacggaattttcagTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGAT
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gtaaaaactcaaaaccaatctttttctgctctgtttttgttggttttaactctcctctgtttttcttcttcattaacaaactctcctctgttttttagttacaagtgtctttttttttttgttatttcagTGACGACTGTAGAGAGTGGAACTAGGGCTTTGCAGTATCTTGGCTTAGATGGAGGCAAAGGGGCTTCTAATCTTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagatttgggttttttttttttcttttctgaaaacgatgggaacggaattttcagTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGAT
ttttc CT-rich tract
ttttttttttttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgtgtgtttgtgtgtgtgtcgattgtcgattttagagcttggagggtcttgagatttgggttttttttttttcttttctgaaaacgatgggaacggaattttcagTGACGGCTGTGGAGAGTGGAACGAGGGCTCTGCAGTTTCTGGGGTTGGACGGGGAGGAGAACTCAGTTGGATTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA