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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatatgttagagcaatttatagttaagtcagcaaattgtctggatttaaatgacttgctagctatgtttgttttgagtaatgagcttttgtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAACTCTGCAATCGCTGCAAGGAACTGAAGTCTCAGGATCATCTGAGGGTGG

Basic information

species Vitis vinifera
transcript Vv17s0000g06230.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161711392|gb|FC059127.1|FC059127
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCT-GTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|294966509|gb|GW837644.1|GW837644
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAACACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|294965360|gb|GW837075.1|GW837075
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGAACACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|110417057|gb|EC983083.1|EC983083
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|161712599|gb|FC062201.1|FC062201
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACGAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|110376460|gb|EC941525.1|EC941525
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|110712693|gb|EE087960.1|EE087960
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAACACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|110718657|gb|EE095738.1|EE095738
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAACACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|110686225|gb|EE063635.1|EE063635
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAACACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|110695017|gb|EE072554.1|EE072554
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
EST: gi|161711275|gb|FC060363.1|FC060363
EST:     TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAG                         GAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA
genomic: TTGTTTTCCCTTTTCTCTGACCGATTACAAGAGCGGTTTCAGCCTTTCAGgtacatctta ... gtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaatgacttgctagctatgtttgttttgagtaatgagcttttgtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAACTCTGCAATCGCTGCAAGGAACTGAAGTCTCAGGATCATCTGAGGGTGG
                                        cttttgtc  CT-rich tract
                      tttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgatatgttagagcaatttatagttaagtcagcaaattgtctggatttaaatgacttgctagctatgtttgttttgagtaatgagcttttgtcggcgtagGAATGGGTGATCACCTGGTTTTGTGTGTGGACCGCCTGATAAAACCTCAAACTCTGCAATCGCTGCAAGGAACTGAAGTCTCAGGATCATCTGAGGGTGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - tcagcaa
- - - - - - - - - - - - - - - - - - -tgtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctatg