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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcaaacagaaggctgtggtttgtatgtatcttcaatagtgtttgagagaacaattagtgaattggggttcttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA

Basic information

species Vitis vinifera
transcript Vv17s0000g05820.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os05g08960.1 (Oryza sativa), 3'ss of exon 1
atcaaacagaaggctgtggtttgtatgtatcttcaatagtgtttgagagaacaattagtgaattggggttcttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA--
||    | |     |  |  |  |  |||   | || | | |  | |           |   ||    ||   ||  ||||||    |||  || || |    |||| ||||||||| ||||| ||||||||||||||||| ||||| ||  |  ||   ||||| || || || ||||| ||||| || || || ||||  
attggtctggctagtaggtgtcatgggtaaactaaagaatctcagtgtaggtttcccattccttctatttagcttatttggtgac--ttggtatctacacagGGTGAATATGTCGACGCCAGCAAGGAAGAGGTTGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAAC

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G10640.2 (Glycine max), 3'ss of exon 1
------atcaaacagaaggctgtggtttgtatgtatcttcaatagtgtttgagagaacaatta-gtgaattggggttcttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA
       | || ||     ||    ||   || | || |   |  ||||  | |||| | | | || | ||    || || | || | ||||  ||    ||| ||||   |  | |||||||| || |||||||||||| | ||||||||||| |||||| ||||||| ||||| ||||| || |||||||| || || || || |
ttgttccttaaccatctaactcacctt---atatctccttgttgttgttgaaaagaaaattgaagttatttccattttttcttgtggctgttagtt----tttctagGTGCTAGCAATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCCCTCAGGATA

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA17G10640.1 (Glycine max), 3'ss of exon 1
---------------atcaaacagaaggctgtggtttgtatgtatcttcaatagtgtttgagagaacaatta-gtgaattggggttcttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA
                | || ||     ||    ||   || | || |   |  ||||  | |||| | | | || | ||    || || | || | ||||  ||    ||| ||||   |  | |||||||| || |||||||||||| | ||||||||||| |||||| ||||||| ||||| ||||| || |||||||| || |         
tctcttctcttgttccttaaccatctaactcacctt---atatctccttgttgttgttgaaaagaaaattgaagttatttccattttttcttgtggctgttagTT----TTTCTAGGTGCTAGCAATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCTCCTGCAGGAATCAGTGGCGCCC---------

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G01270.1 (Glycine max), 3'ss of exon 1
-atcaaacagaaggctgtggtttgt-atgtatcttcaatagtgtttgagagaacaatt--agtgaattggggtt-cttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA
    || | |||       ||| || |||  |||| |||||| ||| |    | ||||  ||| | ||  | || || || || | ||||| ||    ||| ||||   |  | |||||||| || |||||||||||| | ||||||||||| |||||| ||||||| ||||| ||||| || ||||| || || || || || |
ttggaatctgaattgacctgttggttatgcttctt-aatagttttttaatagaaaattgaagttatttccgttttctctttgtggctgttggtt----tttctagGTGATATCAATGTCGACTCCTGCTAGGAAGAGGCTCATGAGAGATTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGAATCAGCGGGGCACCTCAGGATA

upper sequence: Vv17s0000g05820.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA04G34170.2 (Glycine max), 3'ss of exon 1
----atcaaacag--aaggctgtggtttgtatgtatcttcaatagtgtttgagagaacaattagtgaattggggttcttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA
     |      |  | |   | || || | ||   | | ||      | ||  ||   |  |||  |||    | ||| | ||  |||||| ||    |||  |||  | ||| |||||||| || |||||||||||| |||||||||| || |||||| ||||||| ||||| ||||| || ||||| || || ||||| || |
ttatgtggtgttgctatgttggaggcttttttgcccccttaaatacactcgattgattca--agtctattcttttccttattgtgagtgttggtt----tttcaagGTGGCGACAATGTCGACTCCTGCTAGGAAGAGGCTGATGAGAGACTTCAAGAGGCTGCAACAAGACCCGCCTGCAGGGATCAGCGGTGCCCCCCAGGATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351044280|gb|FQ447634.1|FQ447634
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|349823648|gb|FQ415058.1|FQ415058
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351029672|gb|FQ427512.1|FQ427512
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|110726002|gb|EE103053.1|EE103053
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTC----                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|110426330|gb|EC992735.1|EC992735
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|349812793|gb|FQ410435.1|FQ410435
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351040450|gb|FQ434583.1|FQ434583
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351033819|gb|FQ447857.1|FQ447857
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351024032|gb|FQ423455.1|FQ423455
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|349830568|gb|FQ416866.1|FQ416866
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351031294|gb|FQ445319.1|FQ445319
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351014290|gb|FQ437292.1|FQ437292
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|110731799|gb|EE106527.1|EE106527
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTC----                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|349826891|gb|FQ418982.1|FQ418982
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351035318|gb|FQ459585.1|FQ459585
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|110700261|gb|EE078097.1|EE078097
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|110421523|gb|EC987821.1|EC987821
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|349824373|gb|FQ417760.1|FQ417760
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351014644|gb|FQ437646.1|FQ437646
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351044244|gb|FQ447598.1|FQ447598
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|110361377|gb|EC924844.1|EC924844
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GTGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351013685|gb|FQ433837.1|FQ433837
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCGGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|349823308|gb|FQ402507.1|FQ402507
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351016912|gb|FQ424339.1|FQ424339
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|349829768|gb|FQ421286.1|FQ421286
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351029101|gb|FQ435301.1|FQ435301
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|30302161|gb|CB978955.1|CB978955
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351024814|gb|FQ430639.1|FQ430639
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCGGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|351053304|gb|FQ459172.1|FQ459172
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
EST: gi|110714545|gb|EE091578.1|EE091578
EST:     GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGG                         GCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG
genomic: GACTCCGAAACCTCTCTTCTAATCTGGTTCGCAGCCTAGAGATTTCGTGGgtaattttaa ... aaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagaacaattagtgaattggggttcttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA
                                    tgttgat  putative branch site (score: 4)
                                      ttgattgaaatttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcaaacagaaggctgtggtttgtatgtatcttcaatagtgtttgagagaacaattagtgaattggggttcttttggttggtgttgattgaaatttatagGCCGTGACTATGTCGACCCCAGCTAGGAAGAGGTTGATGAGAGATTTTAAGAGGTTGCAACAGGACCCCCCTGCCGGCATCAGTGGAGCTCCCCAAGACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - aacagaa
- - - - - - - - - - -tgtatgt
- - - - - - - - - - - - - - - - - - - - - - - -agaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg