Sequence
atgc intronic sequence ATGC exonic sequence...actcaatctttgtttgttttattttgttcttgcttgagaatagattgttttgtatattgattataaggttctgacatttttgctctttatttttcttaagGAATCAAGCCGAAGTTGATGCCATCATGCTAGAGTTTGATGGAACCCCAAATAAGTCAAAACTTGGGGCTAATGCAACACTGGGAGTGTCTCTCAGCGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g04540.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA18G22780.1 (Glycine max), 3'ss of exon 2
actcaatctttgtttgttttattttgttcttgcttgagaatagattgttttgtatattgattataaggtt------ctgacatttttgctctttatttttcttaagGAATCAAGCCGAAGTTGATGCCATCATGCTAGAGTTTGATGGAACCCCAAATAAGTCAAAACTTGGGGCTAATGCAACACTGGGAGTGTCTCTCAGCGTG
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----gattttatatttacatatactcttcttaccaaaga-tattgggttctgtttttgaatttttgtgttgtacagctgatatttatgg-ctctgtgtttgtcaagGAATCAAGCTGATGTTGATGCTATTATGCTGGAAATTGATGGAACTCCTAACAAATCAAAACTAGGGGCTAATGCAATATTGGGAGTTTCGCTGAGTGTA
upper sequence: Vv17s0000g04540.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA06G23080.1 (Glycine max), 3'ss of exon 1
actcaatctttgtttgt-tttattt-tgttcttgcttgagaa--tagattgttttgtatattgattataaggttctgacatttttgctctttatttttcttaagGAATCAAGCCGAAGTTGATGCCATCATGCTAGAGTTTGATGGAACCCCAAATAAGTCAAAACTTGGGGCTAATGCAACACTGGGAGTGTCTCTCAGCGTG
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----aaacttgttttatatttacatatactcttaacaaagatattgggttctgtttttgaagttttgggcagtacggctgatatttacggctgtgtttgtcaagGAATCAAGCTGATGTGGATGCTATTATGCTGGAAATTGATGGAACTCCTAACAAATCAAAACTAGGGGCTAATGCAATATTGGGAGTTTCACTGAGTGTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttttgtatattgattataaggttctgacatttttgctctttatttttcttaagGAATCAAGCCGAAGTTGATGCCATCATGCTAGAGTTTGATGGAACCCCAAATAAGTCAAAACTTGGGGCTAATGCAACACTGGGAGTGTCTCTCAGCGTG
ttctgac putative branch site (score: 2)
catttttgctctttat CT-rich tract
tgtatattgattataa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actcaatctttgtttgttttattttgttcttgcttgagaatagattgttttgtatattgattataaggttctgacatttttgctctttatttttcttaagGAATCAAGCCGAAGTTGATGCCATCATGCTAGAGTTTGATGGAACCCCAAATAAGTCAAAACTTGGGGCTAATGCAACACTGGGAGTGTCTCTCAGCGTG
- - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - -gaataga