Sequence
atgc intronic sequence ATGC exonic sequence...gtatcttataccatggagcatggatttcttttatccattgaaaacaaagtagggaaaatattgtttaaatgtttggttaagattcctttgttgtttgcagAATTTGATTTAGAGAAGGAAAGGAGTGTGTTGGATGAACAAGGGCTTAGAATAGCTGAAAATCAGGAAAACAGCCAGAAAAATCGGCGGAAGCTTGCAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G31920.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------------------------gtatcttataccatggagcatggatt----------tcttttatccat----tgaaaacaaagtagggaaaatattgtt-------taaatgtttggttaagattcctttgttgtttgcagAATTTGATTTAGAGAAGGAAAGGAGTGTGTTGGATGAACAAGGGCTTAGAATAGCTGAAAATCAGGAAAACAGCCAGAAAAATCGGCGGAAGCTTGCAGA
| || | | | | | || ||| ||| | ||| | || | | | || | || | ||| || | | | || | ||| |||| ||||| || |||||||| | | | |||||||| ||||||||| |||| || || || ||||||||||| |||| ||||||||| |||||||||||
gtcacaccgaaacttcacttccacgtttcgctctttccaaatttccgtcgattttcatagctttcatctgatttcgtgtttccgcgtgtgtgaattgacttgacgatctctaatctgtgatgtgttgccgcattgtttcaattgctgcaattgcgatgaattcgtgactctgtgtttattcgtcttttcagATTTTGAGTTGGAGAAGGAGAAATCTATATTGGATGAGCAAGGGCTTCGAATTGCAGAGAACCAGGAAAACAGTCAGAGAAATCGGCGCAAGCTTGCAGA
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA07G09890.2 (Glycine max), 3'ss of exon 1
-----------------------------------------------------------------------------gtatct---tataccatggagcatggatttcttttatccat----tgaaaacaaagtagggaaaatattg---tttaaatgtttggttaagattcctttgttg--tttgcagAATTTGATTTAGAGAAGGAAAGGAGTGTGTTGGATGAACAAGGGCTTAGAATAGCTGAAAATCAGGAAAACAGCCAGAAAAATCGGCGGAAGCTTGCAGA
|| ||| | | | | |||| ||| | ||| || || | | | || | || || ||| || | | | ||| | | ||| |||| ||||| || |||||||| | | | ||||||| ||||||||| |||| ||||| || ||||||| ||| ||||||||||| || |||||||| ||
gtaacaccgaaacttcactttcacgtttcgctctttccaattttctgtcgattttcatatctttcatcttagttcgtgtttctctgtgtgctaattgacatgacgatctctaatctatgatgtgttgccgcattgtttgaattgctgcaattgcgatggtttcgtgactctgttttttcgtcttttcagATTTTGAGTTGGAGAAGGAGAAATCTATACTGGATGAGCAAGGGCTTCGAATTGCTGAGAACCAGGAAAGCAGTCAGAAAAATCGCCGCAAGCTTGCCGA
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT3G18480.1 (Arabidopsis thaliana), 3'ss of exon 1
gtatcttataccatggagcatggatttcttttatccattgaaaacaaagtagg-gaaaatattgtttaaatgtttggttaagattcctttg-----ttgtttgcagAATTTGATTTAGAGAAGGAAAGGAGTGTGTTGGATGAACAAGGGCTTAGAATAGCTGAAAATCAGGAAAACAGCCAGAAAAATCGGCGGAAGCTTGCAGA
| || | | ||| | | | || || | || || | || ||| |||| | |||| | || | | |||| | |||||||||||||||| |||||||| | || || | || || |||||||||||||||||||||||||| ||||||||||| || ||||| || |||||||||||
-gaactggttctgtgg----ttgctcgctgtt-ttgatagacatcatcatagaagaaagctcttcccgaatgatccatttacttgtctttaaactacttgttgcagAATTTGATTTGGAGAAGGAGAAAAGCCTGCTTGACGAGCAAGGGCTTAGAATAGCTGAAAATCAAGAAAACAGCCAAAAGAATCGCCGAAAGCTTGCAGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaagtagggaaaatattgtttaaatgtttggttaagattcctttgttgtttgcagAATTTGATTTAGAGAAGGAAAGGAGTGTGTTGGATGAACAAGGGCTTAGAATAGCTGAAAATCAGGAAAACAGCCAGAAAAATCGGCGGAAGCTTGCAGA
ttcctttgttgttt CT-rich tract
aaaatattgtttaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatcttataccatggagcatggatttcttttatccattgaaaacaaagtagggaaaatattgtttaaatgtttggttaagattcctttgttgtttgcagAATTTGATTTAGAGAAGGAAAGGAGTGTGTTGGATGAACAAGGGCTTAGAATAGCTGAAAATCAGGAAAACAGCCAGAAAAATCGGCGGAAGCTTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - ccatgga
- - - - - - - - -gcatgga
- - - - - - - - - - - - - - - - - ccattga
- - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgg