Sequence
atgc intronic sequence ATGC exonic sequence...atttattgagctaaggatccattagaatacaaaccaatacttttaggttactcatataatttgaaaagtaactgacaaattttaaatttctcatttttagGGTTTGAAAAGGCGTATGAAGGCAATTAGTGGAGCTGTTGACCATATTTTAGAAAAGATCATTGATGAGCATAAACAAGACGCTAGCGAAAATCAGGGAA
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110371856|gb|EC935981.1|EC935981EST: CTTTCAATATAGCAGATTATGTGCCCTTTCTGGGGGCCCTCGATCTTCAG GGTTTGAAAAGGCGTATGAAGGCAATTAGTGGAGCTGTTGACCATATTTTA
genomic: CTTTCAATATAGCAGATTATGTGCCCTTTCTGGGGGCCCTCGATCTTCAGgtagttctca ... tcatttttagGGTTTGAAAAGGCGTATGAAGGCAATTAGTGGAGCTGTTGACCATATTTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttactcatataatttgaaaagtaactgacaaattttaaatttctcatttttagGGTTTGAAAAGGCGTATGAAGGCAATTAGTGGAGCTGTTGACCATATTTTAGAAAAGATCATTGATGAGCATAAACAAGACGCTAGCGAAAATCAGGGAA
aactgac putative branch site (score: 2)
tttctcattttt putative PPT
atataatttgaaaagt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttattgagctaaggatccattagaatacaaaccaatacttttaggttactcatataatttgaaaagtaactgacaaattttaaatttctcatttttagGGTTTGAAAAGGCGTATGAAGGCAATTAGTGGAGCTGTTGACCATATTTTAGAAAAGATCATTGATGAGCATAAACAAGACGCTAGCGAAAATCAGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - ggatcca
- - - - - - - - - - - - - - -caaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacaa