1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttttaataagaaattgataaccagcatttttgttgtcaatgatctatgagactttgttaccttattctgaagtttccttattggtgttgcctttgcagCGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTTCATGATTCTGACCCTACCATTGGAATGATGCGCCCAGGATCAGATGTGT
species | Vitis vinifera |
transcript | Vv17s0000g03210.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCTTCAGG-AGAAGGGAAAGTTGATGGAGACAAGATCAACCAGAGGGAG CGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTTEST: gi|34545120|gb|CF513352.1|CF513352
genomic: TGCTTCGGGAAG-AGGGAAAGTTGATGGAGACAAGATCAACCAGAGGGAGgtctctttct ... gcctttgcagCGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTT
EST: GGGAAAGTTGATGGAGACAAGATCAACCAGAGGGAG CGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTTEST: gi|34546115|gb|CF514347.1|CF514347
genomic: GGGAAAGTTGATGGAGACAAGATCAACCAGAGGGAGgtctctttct ... gcctttgcagCGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTT
EST: GATCAACCAGAGGGAG CGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTT
genomic: GATCAACCAGAGGGAGgtctctttct ... gcctttgcagCGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTT
ctatgagactttgttaccttattctgaagtttccttattggtgttgcctttgcagCGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTTCATGATTCTGACCCTACCATTGGAATGATGCGCCCAGGATCAGATGTGT
ttgccttt CT-rich tract
tttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttaataagaaattgataaccagcatttttgttgtcaatgatctatgagactttgttaccttattctgaagtttccttattggtgttgcctttgcagCGAGCTTCTTGCCCTACAAGGCGAGCAACAAACTCTGAGCACATCTCTTTTCATGATTCTGACCCTACCATTGGAATGATGCGCCCAGGATCAGATGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -ataagaa
- - - - - - - - - ataacca
- - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - -ctatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttacc