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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtaaaactttgtaacataaaattccattgtgctactacctttatccattgtgttttgaaatttgattgactttggcagCTGTCAGTATTCAAGAGTTGTTGTCTTTAGTAAAGTTCCGCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAG

Basic information

species Vitis vinifera
transcript Vv17s0000g03030.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G373175_T02 (Zea mays), 3'ss of exon 2
--gtattgtaaaactttgtaacataaaattccattgtgctactacctttatccattgtgttttgaaatttgattg-actttggcagCTGTCAGTATTCAAGAGTTGTTGTCTTTAGTAAAGTTCCGCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAG
     ||||    ||||  |   |   || |    ||  || |   | | | || | |  | ||| ||     |  | | ||||||| |||||||||| ||||||||||| || ||||| |||||  |||| ||||| ||||| ||||| ||||||||  | || || || |||
gtactttgttgctcttttcaggttctgatactg--gtagtatttaatatttacaatataatctgacatgaatctacattatggcagCCGTCAGTATTCTAGAGTTGTTGTGTTCAGTAAGGTTCCATTGCCTAATTATAGATCAGATCTTGATGATAAAAGACCCCAAAGAGAG

upper sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA08G05480.1 (Glycine max), 3'ss of exon 2
gtattgtaaaactttgtaacataaaattccattgtgctactacctttatccattgtgttttg-aaatttgattgactttggcagCTGTCAGTATTCAAGAGTTGTTGTCTTTAGTAAAGTTCCGCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAG
         | || |   |  |  | ||   |  ||| | |  ||   |  |||   ||||   |||    || ||||| ||||| | |||||| ||||||||||||| ||||| || |  ||  ||||||||||| |  ||||| |||||||||||||||| || || |||
-------gtagctatcctattttcactttagtc-tgc-attttctccttttattacattttacgaatgatttttacttttgcagCCGGCAGTATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAATTACCGCCCTGATTTGGATGATAAGCGTCCGCAAAGAGAG

upper sequence: Vv17s0000g03030.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA05G34180.1 (Glycine max), 3'ss of exon 2
gtattgtaaaactttgtaacataaaattccattgtgctactacctttatccattgtgttttga-aatttgattgactttggcagCTGTCAGTATTCAAGAGTTGTTGTCTTTAGTAAAGTTCCGCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAG
         | || |   |  |    ||  | ||||| | | | || ||   ||   ||||   |||    || ||||| ||||| | |||||| ||||||||||||| ||||| || |  ||  ||||||| ||| |  ||||| ||||||||||||||||||| || |||
-------gtagctatcctattttcgcttt-agtgtgc-atttcgttcatttgttagattttatcaatgaattttacttttgcagCCGGCAGTATGCAAGAGTTGTTGTGTTTAGCAAGGCGCCTTTGCCAAACTACCGCCCTGATTTGGATGATAAGCGTCCACAAAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattgtgctactacctttatccattgtgttttgaaatttgattgactttggcagCTGTCAGTATTCAAGAGTTGTTGTCTTTAGTAAAGTTCCGCTGCCAAATTACAGATCTGATCTGGATGATAAGCGTCCACAGAGGGAG
                                        gattgac  putative branch site (score: 3)
                             ttttgaaatttgatt  TA-rich tract