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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccgttttttttttttttttttgtatttttggaagttttaatttatttttttctacattactgttgtgattattgtttttttttttttaaataatttttggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG

Basic information

species Vitis vinifera
transcript Vv17s0000g02680.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351038587|gb|FQ464453.1|FQ464453
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351042229|gb|FQ442696.1|FQ442696
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351055479|gb|FQ442275.1|FQ442275
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351015813|gb|FQ431768.1|FQ431768
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349820199|gb|FQ406875.1|FQ406875
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349828779|gb|FQ419112.1|FQ419112
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351033074|gb|FQ446427.1|FQ446427
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|352794098|gb|FQ479340.1|FQ479340
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351026942|gb|FQ436595.1|FQ436595
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351045661|gb|FQ440846.1|FQ440846
EST:     AGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: AGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351041781|gb|FQ455991.1|FQ455991
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351022837|gb|FQ428746.1|FQ428746
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|352790099|gb|FQ479709.1|FQ479709
EST:     AGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: AGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349833003|gb|FQ416381.1|FQ416381
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349824288|gb|FQ417699.1|FQ417699
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|110691322|gb|EE069288.1|EE069288
EST:     CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351023766|gb|FQ448317.1|FQ448317
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351042412|gb|FQ442879.1|FQ442879
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349828121|gb|FQ415449.1|FQ415449
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349821869|gb|FQ413040.1|FQ413040
EST:     AGCATTTGGGATGTCTTCCTTCCAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: AGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|110690437|gb|EE067536.1|EE067536
EST:     CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349807852|gb|FQ402243.1|FQ402243
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351038429|gb|FQ464295.1|FQ464295
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349830823|gb|FQ417121.1|FQ417121
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349824165|gb|FQ417552.1|FQ417552
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351042983|gb|FQ434424.1|FQ434424
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTACCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351049247|gb|FQ428990.1|FQ428990
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351042839|gb|FQ451133.1|FQ451133
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351021685|gb|FQ437070.1|FQ437070
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351019070|gb|FQ426569.1|FQ426569
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|110686135|gb|EE063475.1|EE063475
EST:     CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351038347|gb|FQ461039.1|FQ461039
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351042390|gb|FQ442857.1|FQ442857
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351016597|gb|FQ424024.1|FQ424024
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351019040|gb|FQ426539.1|FQ426539
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349820204|gb|FQ406880.1|FQ406880
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351016480|gb|FQ423907.1|FQ423907
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351024209|gb|FQ423632.1|FQ423632
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349818794|gb|FQ409328.1|FQ409328
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351032953|gb|FQ461842.1|FQ461842
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|110687898|gb|EE065834.1|EE065834
EST:     CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|110688342|gb|EE066782.1|EE066782
EST:     CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349811511|gb|FQ409507.1|FQ409507
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349829906|gb|FQ422219.1|FQ422219
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351012024|gb|FQ429830.1|FQ429830
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349828601|gb|FQ418336.1|FQ418336
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351054304|gb|FQ450387.1|FQ450387
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351031036|gb|FQ444863.1|FQ444863
EST:     CAAGCATTTGGGATGTCTTCATTCCAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|110690651|gb|EE067999.1|EE067999
EST:     CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGGACGGCCGAGGACCAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|351055113|gb|FQ440452.1|FQ440452
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|352798358|gb|FQ480383.1|FQ480383
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|352794496|gb|FQ481729.1|FQ481729
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
EST: gi|349828289|gb|FQ416242.1|FQ416242
EST:     CAAGCATTTGGGATGTCTTCATTCGAAAACCCG                         GGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC
genomic: CAAGCATTTGGGATGTCTTCATTCGAAAACCCGgtaaccgttt ... tggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattactgttgtgattattgtttttttttttttaaataatttttggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG
                                         ttttt  CT-rich tract
        tgttgtgattattgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaccgttttttttttttttttttgtatttttggaagttttaatttatttttttctacattactgttgtgattattgtttttttttttttaaataatttttggggagcagGGATTGTGGCGAATAATGGCACTGGAGAGGTGGCGGTTGACCAGTATCACCGGTACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG