Sequence
atgc intronic sequence ATGC exonic sequence...aacttttgtatggaaacacaagctctacaaaatcattatagaagtttttattttcttcttaatagtcttgtttatgagtttggtgattgtttgttttcagATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g02280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G73570.1 (Arabidopsis thaliana), 3'ss of exon 1
aacttttgtatggaaacacaagctctacaaaatcattatagaagtttttattttcttcttaatagtcttgtttatgagtttggtgattgtttgttttcagATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGC
| ||||| || || || | | |||| | || | || | ||| || | | ||||| ||| | ||||||||||||||||| |||||| ||||||||||| ||||||| | ||| ||||| || ||||| || || |||||||| ||| || ||| || |||||
-------------gtaagcaagcaacactgaacatttcaattggaacttatctaattttgaagttttttggtt-----tcttgtgatccttt--tcacagATGTATGATAAAGCTGTTGAGTTATATGCTGAACTAGCAGAGACAGCAGTGAATAGCTTTTTGATATCCAAGGATTCTCCAATGGCTGAGCCAGTTAGAA
upper sequence: Vv17s0000g02280.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT1G18260.1 (Arabidopsis thaliana), 3'ss of exon 1
aacttttgtatggaaacaca-agctctacaaaatcattatagaagtttttattttcttcttaatagtcttgtttatgagtttggtgattgtttgttttcagATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGC
||| | ||| | | || | | || |||| | | | || | ||| | | ||||| ||| || | |||| | | | |||||| |||||||||| ||| | ||||||||||||||||||| | |||||| || |||||| | || || |||||||| || ||| ||||||| |||
-------gtaagtaaagatggaacttttgattttctttatgaatagatgaagttgcatctgagtg--tttgttattgattt--gcgattctgt---tacagATGCATGATAAAGCTGTTCAATTATATGCTGAATTAGCAGAGACAGCTGTCAATAGTTTTCTGATCTCAAAGGATTCTCCGGTGGTTGAACCAACTAGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttattttcttcttaatagtcttgtttatgagtttggtgattgtttgttttcagATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGC
tcttaat putative branch site (score: 3)
tttgttttc putative PPT
ttttcttcttaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacttttgtatggaaacacaagctctacaaaatcattatagaagtttttattttcttcttaatagtcttgtttatgagtttggtgattgtttgttttcagATGTATGATAAAGCGGTTGAGCTATATGCTGAATTAGCAGAAATAGCTGTGAACAGTTTTTTAATTTCGAAGGATTCACCAGTGATTGAACCTGTTAGGC
- - - tgtatgg
- - - - - - - - cacaagc
- - - - - - - - - - - - - - aaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgat