Sequence
atgc intronic sequence ATGC exonic sequence...tgtattattttcattatgcacgtaatgaaggagttgtatgagatgaaaatctcaaatatagttttggaacaaagatttttttaaatgacgatgataatagACGTCAACTCGATTCCAAGGAAATTATGCAGAAGCTTTATATAACTATTATGAAGTTACGCAATTAGAAATTGATCCCCATAATGAAAGTTACAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g01770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os10g38216.1 (Oryza sativa), 3'ss of exon 1
tgtattatttt-cattatgcacgtaatgaaggagttgtatgagatgaaaatctcaaatatagttttggaacaaagatttttttaaatga-----cgatgataatagACGTCAACTCGATTCCAAGGAAATTATGCAGAAGCTTTATATAACTATTATGAAGTTACGCAATTAGAAATTGATCCCCATAATGAAAGTTACAT---
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----tcgcttagtactatgtacagaagggaggagccgtatgaggtgaaaacctcatgtacggttttggaacggagattttttgaatagaacgaacgaccgtaacGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACT
upper sequence: Vv17s0000g01770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os04g16762.1 (Oryza sativa), 3'ss of exon 1
tgtattatttt-cattatgcacgtaatgaaggagttgtatgagatgaaaatctcaaatatagttttggaacaaagatttttttaaatga-----cgatgataatagACGTCAACTCGATTCCAAGGAAATTATGCAGAAGCTTTATATAACTATTATGAAGTTACGCAATTAGAAATTGATCCCCATAATGAAAGTTACAT---
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----tcgcttagtactatgtacagaagggaggagccgtatgaggtgaaaacctcatgtaaggttttggaacggagattttttgaatagaacgaacgaccgtaacGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAATTGATCCCTATGATCGAAGTTATATACT
upper sequence: Vv17s0000g01770.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Osp1g00350.1 (Oryza sativa), 3'ss of exon 1
tgtattatttt-cattatgcacgtaatgaaggagttgtatgagatgaaaatctcaaatatagttttggaacaaagatttttttaaatga-----cgatgataatagACGTCAACTCGATTCCAAGGAAATTATGCAGAAGCTTTATATAACTATTATGAAGTTACGCAATTAGAAATTGATCCCCATAATGAAAGTTACAT---
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----tcgcttagtactatgtacagaagggaggagccgtatgaggtgaaaacctcatgtacggttttggaacggagattttttgaatagaacgaacgaccgtaacGGATGTTGGCTCAATCCGAAGGAAATTATGCGGAAGCTTTGCAAAATTATTATGAAGCTACGCGACTAGAAAGTGATCCCTATGATCGAAGTTATATACT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaatctcaaatatagttttggaacaaagatttttttaaatgacgatgataatagACGTCAACTCGATTCCAAGGAAATTATGCAGAAGCTTTATATAACTATTATGAAGTTACGCAATTAGAAATTGATCCCCATAATGAAAGTTACAT
aacaaagattttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtattattttcattatgcacgtaatgaaggagttgtatgagatgaaaatctcaaatatagttttggaacaaagatttttttaaatgacgatgataatagACGTCAACTCGATTCCAAGGAAATTATGCAGAAGCTTTATATAACTATTATGAAGTTACGCAATTAGAAATTGATCCCCATAATGAAAGTTACAT
- - - - - - - - -gcacgta
- - - - - - - - - - - - - - - - - - - - - - gaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - -aaatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaacaa