Sequence
atgc intronic sequence ATGC exonic sequence...ttttagtaaattttactaaggggtgattttggaatggaatatattcttttatttttgtttcagttttctgaatctcttttttggttgttctgttgtgcagATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTTGCACTAACCATATTCCTTATTGTAGCCCCTGTTGCTGTGTTCTGTGTAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os08g42370.1 (Oryza sativa), 3'ss of exon 1
-ttttagtaaattttactaaggggtgattttggaatggaatatattcttttatttttgtttcagttttctgaatctcttttttggttgttctgttgtgcagATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTTGCACTAACCATATTCCTTATTGTAGCCCCTGTTGCTGTGTTCTGTGTAT
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tgagtattgcacgaaaaacaaatataatgtttgctatgagtgcttgcaattggatttgatggagttctgatggtatccatttatatt-ttgtattttgaagGAATTCTTCTTGCGAGGGAGGTTTATATTTGGGCCTGATGTGAGATCCATATTTCTCACTATGTTCCTCATCGTTGCACCAGTGGTGGCCTTCTGCGTGT
upper sequence: Vv17s0000g00800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os08g42370.3 (Oryza sativa), 3'ss of exon 1
ttttagtaaattttactaaggggtgattttggaatggaatatattcttttatttttgtttcagttttctgaatctcttttttggttgttctgttgtgcagATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTTGCACTAACCATATT--CCTTATTGTAGCCCCTGTTGCTGTGTTCTGTGTAT-
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--atattttgtattttgaaggaattcttcttgcgagggaggtttatatttgggcctgatgtgagatcc-atatttctcactatgttcctcatcgttgcaccagTGGTGGCCTTCTGCGTGTTTGTCGCCAGACACCTCATTGATGACTTTCCCGGTGATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTA
upper sequence: Vv17s0000g00800.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os01g70100.1 (Oryza sativa), 3'ss of exon 1
-ttttagtaaattttactaaggggtgattttggaatggaatatattcttttatttttgtttcagttttctgaatctcttttttggttgttctgttgtgcagATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTTGCAC-TAACCATATTCCTTATTGTAGCCCCTGTTGCTGTGTTCTGTGTAT
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gctggagtgatgatagctgtatga-gatcttcaaatcacttctgcgaatttaagaagtaggaaggtgtgattgcagcttatagcttttgtttctttttcagGTGTTTGTTCTTCAGGGGAGGTTTATATTTGGACCCGATGCAAGATC-CTTGTACGTCACCATGTTCCTCATCATCGCGCCAGCGTCAATCTTTTGTTTGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721421|gb|FC071075.1|FC071075EST: CCGATGGCCCGGCCGTGCTCCGGAAATATCAGGCATGGAAAGGCAGCAAT ATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTT
genomic: GCGATGGCGCGGCCGTGCTCCGGAAATATCAGGCATGGAAAGGCAGCAATgtgagttttg ... tgttgtgcagATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttatttttgtttcagttttctgaatctcttttttggttgttctgttgtgcagATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTTGCACTAACCATATTCCTTATTGTAGCCCCTGTTGCTGTGTTCTGTGTAT
ttgttct CT-rich tract
atttttgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttagtaaattttactaaggggtgattttggaatggaatatattcttttatttttgtttcagttttctgaatctcttttttggttgttctgttgtgcagATATTTTTTCTTCAAGGGAGGTTTATATTTGGACCCGATGTGAGATCTCTTGCACTAACCATATTCCTTATTGTAGCCCCTGTTGCTGTGTTCTGTGTAT
- - - - - - - - - aggggtg
- - - - - - - - - - - - - - - - aatggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgt