1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtccatttcttatttttattttgtattttttggttttttattttgttaatcttttggtaatttaattttctgagattattgttgttattgttgctgatgttgttgcggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGTATCTTCGTATTCAG
species | Vitis vinifera |
transcript | Vv17s0000g00500.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|71874609|gb|DT023664.1|DT023664
genomic: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|110709258|gb|EE084571.1|EE084571
genomic: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|71864618|gb|DT013673.1|DT013673
genomic: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|71861348|gb|DT010403.1|DT010403
genomic: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|161706607|gb|FC057225.1|FC057225
genomic: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|71867645|gb|DT016700.1|DT016700
genomic: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|161718030|gb|FC068557.1|FC068557
genomic: GAGACTTTTTCAGAAAGATCTTTGATTGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: ACTTTTTCAGAAAGATCTTTGATTGGTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGEST: gi|161717233|gb|FC067239.1|FC067239
genomic: ACTTTTTCAGAAAGATCTTTGA-T--TGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
EST: ACTTTTTCAGAAAGATCTTTGATTGGTGGTGGAAAGCCAGCAATCTTCAG GGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
genomic: ACTTTTTCAGAAAGATCTTTGA-T--TGGTGGAAAGCCAGCAATCTTCAGgtccatttct ... ggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTG
ttaattttctgagattattgttgttattgttgctgatgttgttgcggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGTATCTTCGTATTCAG
tgctgat putative branch site (score: 3)
tttttt putative PPT
attattgttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccatttcttatttttattttgtattttttggttttttattttgttaatcttttggtaatttaattttctgagattattgttgttattgttgctgatgttgttgcggttttttagGGTTACGCGCCGATCTGCTTAGGGCTTGAGGATTTCTACATTCGCAGGCTGTATCTTCGTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT