Sequence
atgc intronic sequence ATGC exonic sequence...cagatttggaatgagatggtcaaaacttttcatattagttttgaacagttttgatctctaaggggaaaagggtgatctgattatttgggataatgtgtagGCAAGGAGGGCACTGAAGGCACTGAAAGCGCTGGTGAAGCTTCAGGCACTGGTGAGAGGCCACATAGTGCGGAAACGAAGTGCAGATATGCTTAGGCGCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0100g00620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G38310.1 (Glycine max), 3'ss of exon 1
-cagatttggaatgagatggtcaaaacttttcatattagttttgaacagttttgatctctaaggggaaaagggtgatctga---ttatttgggataatgtgta-gGCAAGGAGGGCACTGAAGGCACTGAAAGCGCTGGTGAAGCTTCAGGCACTGGTGAGAGGCCACATAGTGCGGAAACGAAGTGCAGATATGCTTAGGCGCA
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ctcaattattggtagtattgtaaga---tttcat--tgcttgtagaaggtcctaaattacaatattaatttgttaaaaaaagtgttttttgggtgaatttggaagGCAAGGAGGGCATTGAGAGCGCTTAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCAGATATGCTGAGGCGCA
upper sequence: Vv16s0100g00620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G32160.1 (Glycine max), 3'ss of exon 1
cagatttggaatgagatggtcaaaacttttc-atattagttttgaacagttttgatctctaaggggaaaagggtgatctgattatttgggataatgtgta-------gGCAAGGAGGGCACTGAAGGCACTGAAAGCGCTGGTGAAGCTTCAGGCACTGGTGAGAGGCCACATAGTGCGGAAACGAAGTGCAGATATGCTTAGGCGCA
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------aaaaatgtgatagttcaatttcatggatatgttttatgaacagtac-gatatggaatag-aattttatgatttacttatatttttttatgtgaatttggaagGCAAGGAGGGCATTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTGGTGAGGGGTCACATTGTGAGGAAGCAAACTTCAGATATGCTAAGGCGCA
upper sequence: Vv16s0100g00620.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G62070.1 (Arabidopsis thaliana), 3'ss of exon 1
cagatttggaatgagatggtcaaaacttttcatattagttttgaacagttttgatctctaaggggaaaagggt-gatctgattatttgggataatgtgtagGCAAGGAGGGCACTGAAGGCACTGAAAGCGCTGGTGAAGCTTCAGGCACTGGTGAGAGGCCACATAGTGCGGAAACGAAGTGCAGATATGCTTAGGCGCA
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-agttctttctatatggagtaaatattcattttttgaacataaattaaagactctatatgaagtttattggtttgctttggctactttggaaaattttcagGCGAGGAGAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAGTGAGAAAACAAACTGCAGATATGCTTAGAAGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagttttgatctctaaggggaaaagggtgatctgattatttgggataatgtgtagGCAAGGAGGGCACTGAAGGCACTGAAAGCGCTGGTGAAGCTTCAGGCACTGGTGAGAGGCCACATAGTGCGGAAACGAAGTGCAGATATGCTTAGGCGCA
atctgat putative branch site (score: 4)
tgattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagatttggaatgagatggtcaaaacttttcatattagttttgaacagttttgatctctaaggggaaaagggtgatctgattatttgggataatgtgtagGCAAGGAGGGCACTGAAGGCACTGAAAGCGCTGGTGAAGCTTCAGGCACTGGTGAGAGGCCACATAGTGCGGAAACGAAGTGCAGATATGCTTAGGCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - -ggaatga
- - - - - - - - - - caaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaaaa