Sequence
atgc intronic sequence ATGC exonic sequencegtggattccgaaacttccattaatttgattgataagttgattattgtgaagcaacttagagacgataatatggtttttgcctgtgattttgtagGTTGATCTTGAATTCAAGGCTAAGTTTTTGTTTTCGGTGGGGAATATCTACAGAGCGCCTCCTTTGATGGTGGCCACGGTGTTGACGTCGGAGGAATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0100g00330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G32400.1 (Glycine max), 3'ss of exon 1
------gtggattccgaaacttccattaatttgattgataagttgatta-ttgtgaagcaacttagagacgataatatggtttttgcctgtgattttg--tagGTTGATCTTGAATTCAAGGCTAAGTTTTTGTTTTCGGTGGGGAATATCTACAGAGCGCCTCCTTTGATGGTGGCCACGGTGTTGACGTCGGAGGAATCAG
| | || | ||||| | | ||| | | ||| || | | ||| | |||| ||||||| || |||| ||||||||||||| |||||||| ||||| |||||||| | || | | |||| | || || || ||||||||| || |||||||| || || ||| ||
aacatggccttattttaacttgtcattaggtgtctctctaattagtttagttccataactactcaat--tgatagtatggttgcc-ttggtttttttaaccagGTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCCGGTAGTCTCTATAAGGCTCCCCCATTGATGGTGAAGACAGTGTTGACATCTGAAGAAACAA
upper sequence: Vv16s0100g00330.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G27230.1 (Glycine max), 3'ss of exon 1
---gtggattccgaaacttccattaatttgatt----gataagttgatt-attgtgaagcaacttagagacgataatatggtttttgcctgtgattttgtagGTTGATCTTGAATTCAAGGCTAAGTTTTTGTTTTCGGTGGGGAATATCTACAGAGCGCCTCCTTTGATGGTGGCCACGGTGTTGACGTCGGAGGAATCAG
|| | || |||| ||| || | | | ||| || | || || | | | | | ||| || | | || ||||||||||||| |||||||| ||||| |||||||| | | | | |||||| || ||||| ||||||||| || |||||||| || || ||| ||
cttgtcataggtgtctctctgattagtttagttccataaccactcaattgatgatatggctaccttct--tgttgttgttgttgttttttttttttaaccagGTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCTGCTAGTCTCTACAAGGCTCCTCCATTGATGGTGAAGACAGTGTTGACATCTGAAGAAACAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attattgtgaagcaacttagagacgataatatggtttttgcctgtgattttgtagGTTGATCTTGAATTCAAGGCTAAGTTTTTGTTTTCGGTGGGGAATATCTACAGAGCGCCTCCTTTGATGGTGGCCACGGTGTTGACGTCGGAGGAATCAG
agttgat putative branch site (score: 5)
ataatatggttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggattccgaaacttccattaatttgattgataagttgattattgtgaagcaacttagagacgataatatggtttttgcctgtgattttgtagGTTGATCTTGAATTCAAGGCTAAGTTTTTGTTTTCGGTGGGGAATATCTACAGAGCGCCTCCTTTGATGGTGGCCACGGTGTTGACGTCGGAGGAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA