1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgggataccctaattccctgttttcggtataaagataaagattttcagttcagtttcaaagcaaagctctacatttaatctctgttttgatcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGCTTCGAATGATAGTGGCAAACAACATAAGGTTTGTTACCATTGGAGGGC
species | Vitis vinifera |
transcript | Vv16s0100g00320.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAG CTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGEST: gi|161719699|gb|FC068007.1|FC068007
genomic: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAGgtctgatgaa ... tcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAG
EST: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAG CTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGEST: gi|110698131|gb|EE075789.1|EE075789
genomic: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAGgtctgatgaa ... tcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAG
EST: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAG CTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGEST: gi|71863052|gb|DT012107.1|DT012107
genomic: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAGgtctgatgaa ... tcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAG
EST: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAG CTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGEST: gi|33409918|gb|CF215545.1|CF215545
genomic: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAGgtctgatgaa ... tcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAG
EST: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAG CTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGEST: gi|34550256|gb|CF518474.1|CF518474
genomic: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAGgtctgatgaa ... tcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAG
EST: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAG CTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAG
genomic: TTCCGGAGAGAGAGCTGAGAGGGAGGAGATTGGGGGTTTATGGTGATCAGgtctgatgaa ... tcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAG
cagttcagtttcaaagcaaagctctacatttaatctctgttttgatcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGCTTCGAATGATAGTGGCAAACAACATAAGGTTTGTTACCATTGGAGGGC
ttttgat putative branch site (score: 4)
ttttgatcttcttt CT-rich tract
tacatttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgggataccctaattccctgttttcggtataaagataaagattttcagttcagtttcaaagcaaagctctacatttaatctctgttttgatcttctttagCTATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGCTTCGAATGATAGTGGCAAACAACATAAGGTTTGTTACCATTGGAGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - accctaa
- - - - - - - tccctgt
- - - - - - - - - - - - - - ataaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctaca