1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttacatgtttttatgtttatgtatgtccatttgcatcattgtatctcaatctccctctcctaagtctgaccactagcgtttttcttttctataattgcagATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGTCTACAGAATCAACACAAAAGCTTAATTATG
species | Vitis vinifera |
transcript | Vv16s0098g01510.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGGCCATGGTTCTGCCCTTCGTGCTCCAGTCAGAAGAAGCTCAAGT ATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGTEST: gi|37189227|gb|CF608576.1|CF608576
genomic: CAAAGGGCCATGGTTCTGCCCTTCGTGCTCCAGTCAGAAGAAGCTCAAGTgtatgttgat ... ataattgcagATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGT
EST: CAAAGGGCCATGGTTCTGCCCTTCGTGCTCCAGTCAGAAGAATCTCAAGT ATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGT
genomic: CAAAGGGCCATGGTTCTGCCCTTCGTGCTCCAGTCAGAAGAAGCTCAAGTgtatgttgat ... ataattgcagATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGT
tcaatctccctctcctaagtctgaccactagcgtttttcttttctataattgcagATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGTCTACAGAATCAACACAAAAGCTTAATTATG
gtctgac putative branch site (score: 3)
cgtttttcttttctat putative PPT
tttttcttttctataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacatgtttttatgtttatgtatgtccatttgcatcattgtatctcaatctccctctcctaagtctgaccactagcgtttttcttttctataattgcagATTTTCCTCTGGTCCAAACCAAAATTGTTGATTTCTTTCGGATTCAGAGGTCTACAGAATCAACACAAAAGCTTAATTATG
- acatgtt
- - - - - - - - - - gtatgtc
- - - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgacca