1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ttatcatccttataaggtagaaaatttaagttatagacaatgaaggttcagaaatataattgttgcttgtgtgtttgatctgtgttttttcaattatcagGATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTTGATTCCATTGGAGGATTGGAAACCATTAAACAAGCATTAGTTGAACTGG
species | Vitis vinifera |
transcript | Vv16s0098g01260.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAATCGCCAAGCGCTTGGGTCGACCCCTCATTCAAACCAATTCATATGAG GATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTTEST: gi|32268094|gb|CD717253.1|CD717253
genomic: AAATCGCCAAGCGCTTGGGTCGACCCCTCATTCAAACCAATTCATATGAGgttatgccag ... caattatcagGATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTT
EST: AAATCGCCAAGCGCTTGGGTCGACCCCTCATTCAAACCAATTCATATGAG GATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTTEST: gi|32247585|gb|CD713404.1|CD713404
genomic: AAATCGCCAAGCGCTTGGGTCGACCCCTCATTCAAACCAATTCATATGAGgttatgccag ... caattatcagGATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTT
EST: AAATCGCCAAGCGCTTGGGTCGACCCCTCATTCAAACCAATTCATATGAG GATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTT
genomic: AAATCGCCAAGCGCTTGGGTCGACCCCTCATTCAAACCAATTCATATGAGgttatgccag ... caattatcagGATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTT
gttcagaaatataattgttgcttgtgtgtttgatctgtgttttttcaattatcagGATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTTGATTCCATTGGAGGATTGGAAACCATTAAACAAGCATTAGTTGAACTGG
gtttgat putative branch site (score: 5)
tgttttttc putative PPT
tgttttttcaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatcatccttataaggtagaaaatttaagttatagacaatgaaggttcagaaatataattgttgcttgtgtgtttgatctgtgttttttcaattatcagGATGTAATAGCCTGTGATGTCATAAACCCTGACCATATTGATGTGGAATTTGATTCCATTGGAGGATTGGAAACCATTAAACAAGCATTAGTTGAACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- -tcatcct
- - - - - - - - - agaaaat
- - - - - - - - - - - - - - - - - - -caatgaa
- - - - - - - - - - - - - - - - - - - - - - - - -agaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgtg