1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtgttcatctttgatgaaccaggattttgtttcggttcttttttttggtgatcgtaggttgaacccagatttttttactttttttatggtttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTGGAAATAAAGTGGGGTCGTCGAGTGCGAATTCTGAGAGTGCGGACACCA
species | Vitis vinifera |
transcript | Vv16s0098g01040.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTEST: gi|30136879|gb|CB922217.1|CB922217
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: AGGCTGTCCGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTEST: gi|110709689|gb|EE085367.1|EE085367
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: AAGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAAGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTEST: gi|71858945|gb|DT008000.1|DT008000
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTEST: gi|110698581|gb|EE076239.1|EE076239
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTEST: gi|71870167|gb|DT019222.1|DT019222
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTEST: gi|110731191|gb|EE109131.1|EE109131
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAAATTAAGGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTEST: gi|30132916|gb|CB918255.1|CB918255
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
EST: AGGCTGTCCGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAG GGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
genomic: AGGCTGTCTGGTTGTGGCATCGAATGGAAACATTTTAGATTAAGGCGCAGgtgggattgt ... ttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCT
tggtgatcgtaggttgaacccagatttttttactttttttatggtttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTGGAAATAAAGTGGGGTCGTCGAGTGCGAATTCTGAGAGTGCGGACACCA
tttttttacttttttt CT-rich tract
atttttttactttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttcatctttgatgaaccaggattttgtttcggttcttttttttggtgatcgtaggttgaacccagatttttttactttttttatggtttttttgtagGGGGGTCGTGTGATTTCGGGGGTTCTGATCATGGCGGTTGTGGAGAATGCTGGAAATAAAGTGGGGTCGTCGAGTGCGAATTCTGAGAGTGCGGACACCA
- - - - - - - tgaacca
- - - - - - - - - - - - - - - - - - - - - - -tggtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaccc