Sequence
atgc intronic sequence ATGC exonic sequence...gaataagtctatgtttattaatgtctctgcatttttctttttggtggttgcttaattgtttcttttaaagtattttcagctgatgattgtagctcctcagGATGCCTCAGCGGATTAAGAAGATGTTTGCAACAATCACTAAGAGTGATAAGAATGGCCCTGTATTTCGGTTTTTCATGGATCTAGGTGATGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0050g01470.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G24090.1 (Glycine max), 3'ss of exon 1
gaataagtctatgtttattaatgtctctgcatttttctttttggtggttgcttaattgtttcttttaaa-----gtattttcagctgatgattgtagctcctcagGATGCCTCAGCGGATTAAGAAGATGTTTGCAACAATCACTAAGAGTGATAAGAATGGCCCTGTATTTCGGTTTTTCATGGATCTAGGTGATGCAG
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---taaagatac-ttgattgaaattgttactcatatggattaagctgttaacagccttatttttctaaaaatgtgaattttcacctattatctatcac-ctgcagAACCCCTGAGTGGTTGAAAAAAGTATTTGCAGCAATCACCAAGAGTGAGAGGAATGGCCCTGTATTTCGCTTTTTTATTGATCTAGGAGATGCAG
upper sequence: Vv16s0050g01470.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA16G29580.1 (Glycine max), 3'ss of exon 1
gaataagtctatgtttattaatgtctct-gcatttttctttttggtggttgcttaattgtttcttttaaagt--attttcagctgatgattgtagctcctcagGATGCCTCAGCGGATTAAGAAGATGTTTGCAACAATCACTAAGAGTGATAAGAATGGCCCTGTATTTCGGTTTTTCATGGATCTAGGTGATGCAG
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--aaagatagttgattgaaattgttactcatatagattaagctgttagtggccttattttttctgaaaatgtgaattttcacctactatctatcac-ctgcagAACCCCTGAGTGGCTGAAAAAAATATTTGCACCGATCACCAAGAGTGAGAGGAATGGTCCTGTATTTCGCTTTTTTATTGATCTAGAAGATGCAG
upper sequence: Vv16s0050g01470.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G62650.1 (Arabidopsis thaliana), 3'ss of exon 1
gaataagtctatgtttattaatgtctctgcatttttctttttggtggttgcttaattgtttct-tttaaagtattttcagctgatgattgtagctcctcagGATGCCTCAGCGGATTAAGAAGATGTTTGCAACAATCACTAAGAGTGATAAGAATGGCCCTGTATTTCGGTTTTTCATGGATCTAGGTGATGCAG
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------gtttattatcactcttcttcctttacttctcactctcgaatattcatgttcgattcagtttccattagcttagcttgttccttgtttatatacagAACACCTGAGTGGCTAAAGAAAATGTTTTCGACTATCACTAAGAGCGAGAGGAATGGCCCTGTGTTCCGTTTTTTCATGGATCTTGGTGATGCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttgcttaattgtttcttttaaagtattttcagctgatgattgtagctcctcagGATGCCTCAGCGGATTAAGAAGATGTTTGCAACAATCACTAAGAGTGATAAGAATGGCCCTGTATTTCGGTTTTTCATGGATCTAGGTGATGCAG
agctgat putative branch site (score: 4)
ctcctc putative PPT
ttaattgtttctttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaataagtctatgtttattaatgtctctgcatttttctttttggtggttgcttaattgtttcttttaaagtattttcagctgatgattgtagctcctcagGATGCCTCAGCGGATTAAGAAGATGTTTGCAACAATCACTAAGAGTGATAAGAATGGCCCTGTATTTCGGTTTTTCATGGATCTAGGTGATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
gaataag
- - - - - - - - - - - -tctctgc
- - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcagct