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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcttccattgattttcttcgattttactgtttttggttgttttctgaattgggttttcttatttttccattctggtttctgggttttatttgaatcttttttggtttttttttttttttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGAGTGGCAGAATGCCAAACATCCAGTTTTATGGAGCCGATTAAGTATAAGG

Basic information

species Vitis vinifera
transcript Vv16s0050g01110.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294966064|gb|GW837431.1|GW837431
EST:     CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT                         GCTCTGGGGATTGTTTCAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
genomic: CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: gi|161721296|gb|FC070042.1|FC070042
EST:     TCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT                         GCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
genomic: TCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: gi|351014648|gb|FQ437650.1|FQ437650
EST:     CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT                         GCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
genomic: CACTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: gi|37190160|gb|CF609509.1|CF609509
EST:     CTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT                         GCTCTGGGGATTGTTTCAGCGGTTCTAATATTGGGGC--TTGAGTTTCCGA
genomic: CTTCTTCTCAAGAGGATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA
EST: gi|110698435|gb|EE075933.1|EE075933
EST:     ATGGAGTTCTGCCTGAATTCGAGAAAACCCCAT                         GCTCTGGGGATTGTTTCAGCGGCTCTAATATTGGGGCTTTTGAGTTTCCGA
genomic: ATGGAGTTCTGCCTGAATTCGAGAAAACCCCATgtaaatcttc ... ttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtttctgggttttatttgaatcttttttggtttttttttttttttttgcacagGCTCTGGGGATTGTTTTAGCGGTTCTAATATTGGGGCTTTTGAGTTTCCGAGTGGCAGAATGCCAAACATCCAGTTTTATGGAGCCGATTAAGTATAAGG
                      tcttttttggtttttt  CT-rich tract
           ttttatttgaatcttt  TA-rich tract