1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctccttagtacagaacttgttttattaactttgttgcatggtagtgcttggagaggttctctcattctgtaattagatggtttatgccatattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGAGTTTTTAGTTGCCCTGCTAGCAAGAATCCAATGTACACATATCGTGAAT
species | Vitis vinifera |
transcript | Vv16s0050g01050.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAG GTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGAEST: gi|110730010|gb|EE106598.1|EE106598
genomic: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctct ... tattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
EST: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAG GTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGAEST: gi|110712053|gb|EE089238.1|EE089238
genomic: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctct ... tattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
EST: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAG GTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
genomic: TCTTCAAGGACGGTATTGGCCTCGGTGGCATTTTCCACAGCGCTGTGCAGgtctttctct ... tattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGA
tgcttggagaggttctctcattctgtaattagatggtttatgccatattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGAGTTTTTAGTTGCCCTGCTAGCAAGAATCCAATGTACACATATCGTGAAT
taattagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctccttagtacagaacttgttttattaactttgttgcatggtagtgcttggagaggttctctcattctgtaattagatggtttatgccatattggacagGTTTATGGAGATGATGAATGGTCATTTGGATTCTGTGAACAAGGAACTGGAGTTTTTAGTTGCCCTGCTAGCAAGAATCCAATGTACACATATCGTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - acagaac
- - - - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcca