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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatttatttatttatttattttctattaaaagtggtcatatgactttggtacaaaaggaatgatttcccaatagttgaaaagatggactagaacaaagtttgttgtcccaggttattcaactgcttcaactgtttttctgtcatgatccgcagTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAA

Basic information

species Vitis vinifera
transcript Vv16s0050g00870.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: LOC_Os08g44840.1 (Oryza sativa), 3'ss of exon 1
gtaacaatttatttatttatttattttctattaaaagtggtcatatgactttggtacaaaaggaatgatttcccaatagttgaaaagatggactagaacaaagtttgttgtcccaggttattcaactgcttcaactgtttttctgtcatgatccgcagTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAA
                                                         |  |  ||   | ||| |||   | |  | | ||| ||  |  |  | |      | |  ||| | |  | ||   |  |  ||   |   ||    |||||| ||    ||  | || ||  | ||| |||| ||||| ||||||||||| ||||||||||| |||||||| |||||||||||||  || ||||| ||  
---------------------------------------------------------accaccaacactgtccaaatttattactatacggagtactagtatatattacaaacaaatttaattaggtactctgatggaattgacgcggtg-catgcagTTGACACGTCTGCGGGACGGGGTGGCAGTGGGGTGCGCCTTCAACCACGCCGTCCTCGACGGCACCTCCACCTGGCACTTCATGACGTCATGGGCGGAGC

upper sequence: Vv16s0050g00870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G179703_T02 (Zea mays), 3'ss of exon 1
gtaacaatttatttatttatttattttctattaaaagtggtcatatgactttggtacaaaaggaatgatttccca-atagttgaaaagatggactagaacaaagtttgttgtcccaggttattcaactgcttcaactgtttttctgtcatgatccgcagTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAA
                                                     ||||   |  |  |  | ||   | |||     | ||  || |       |   |    |  | || ||     |  | || |  |   | || ||||    ||||||||| ||||| |  || || || ||  |||| ||||| ||||||||||| || || ||||| |||||||||||||||||||||  ||| ||||||||  
--------------------------------------------------caagtaccccaacagcggctgcctgtacagt---gcacataaaccattg----gccaggcaacataagtcatcttgtttttacagcgatgcgtttg-catg-catgcagTTCACAAAGCTCAAGGACGGTCTGGCGGTGGGGTGCGCCTTCAACCACGCGGTGCTGGACGGCACCTCCACGTGGCACTTCATGTCCTCCTGGGCCGAGC

upper sequence: Vv16s0050g00870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G24900.1 (Glycine max), 3'ss of exon 1
gtaacaatttatttatttatttattttctattaaaagtggtcatatgactttggtacaaaaggaatgatttcccaatagttgaaaagatggactagaacaaagtttgttgtcccaggttattcaact----gcttcaactgtttttctgtcatgatc-cgcagTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAA
                                                              |         |  ||     |  | ||  |||    |    ||| || |     ||| |||| ||     |||  | ||  ||||| |     || | ||||| || ||||| | |||||| |||||||||||    ||||||||||| |||||| | ||||| ||  |||||||||| ||||||| ||| |||||||| |
------------------------------------------------------------tagtgcaccccactgatcacctatcacattcactctctct---tttattattttctgtttttcatcttctaactttcattgcctttctatttctttctcacagTTAACGAAGCTCAAAGATGGGCTCGCAATGGGCCTAGCGTTCAACCATGCTGTCTTGGACGGGACTGCCACGTGGCAGTTCATGACCTCATGGGCCGAGA

upper sequence: Vv16s0050g00870.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G23940.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaacaatttatttatttatttattttctattaaaagtggtcatatgactttggtacaaaaggaatgatttcccaatagttgaaaagatggactagaacaaagtttgttgtcccaggttattcaactgcttcaactgtttttctgtcatgatccgcagTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAA
                                            |  | |    |  ||||  ||  ||| | | | | || ||||||   |  | ||||       || || || || ||| |    |  ||||  ||||  | ||   |    ||| | |||||||||| |||||| || ||||||||    || ||||| ||||| ||| | ||||| || ||||||||||| || |||||||| |||||||| |
--------------------------------------------accattaacatgaaaaaaaaagcattacactaaaatttaaaagaaaaataaaaaca-------ttttcacaagt-attaattaac--caacatttttcgtttcgcaa----cagGTGACCAAGCTAAAAGATGGGCTTGCAATGGGCCTAGCTTTCAATCACGCAGTCTTAGACGGGACATCCACGTGGCATTTTATGAGCTCATGGGCCGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttgtcccaggttattcaactgcttcaactgtttttctgtcatgatccgcagTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAA
              ttattcaa  TA-rich tract