1 5' 3' | 2 5' 3' | 3 5' 3' |
...tatgaataactcagatgttgtctttttcaaaaaatgtgctctctgttgaataacggacatggatggattgacgtatactgaatgataattgttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAAAGGTCATATTGTAACCAAGAAAGAATTACCTCCACGCCCATCGGATAG
species | Vitis vinifera |
transcript | Vv16s0050g00610.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110385689|gb|EC950235.1|EC950235
genomic: CCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: TCCACTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110422139|gb|EC988452.1|EC988452
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: TCCACTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|87584541|gb|DY473667.1|DY473667
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: CTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110424794|gb|EC991167.1|EC991167
genomic: CTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: CGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|37189943|gb|CF609292.1|CF609292
genomic: CGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: TCCACTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|87586274|gb|DY474608.1|DY474608
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: CTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110692560|gb|EE071942.1|EE071942
genomic: CTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: TCCACTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110693783|gb|EE070314.1|EE070314
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: TCCACTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|83277254|gb|DV941262.1|DV941262
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: ACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110405321|gb|EC970861.1|EC970861
genomic: ACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: TCCACTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|33405067|gb|CF210694.1|CF210694
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: TCCACTCGACCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110405586|gb|EC971129.1|EC971129
genomic: TCCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: CCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110419315|gb|EC985532.1|EC985532
genomic: CCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: CCCCTCAGGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAEST: gi|110732418|gb|EE107685.1|EE107685
genomic: CCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
EST: CCACTCGACCCCTCAAGCGCAGCTAAAG GTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
genomic: CCACTCGACCCCTCAGGCGCAGCTAAAGgtaagcattt ... gttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACA
ttgaataacggacatggatggattgacgtatactgaatgataattgttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAAAGGTCATATTGTAACCAAGAAAGAATTACCTCCACGCCCATCGGATAG
aatgataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgaataactcagatgttgtctttttcaaaaaatgtgctctctgttgaataacggacatggatggattgacgtatactgaatgataattgttgaagcagGTGAGATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAAAGGTCATATTGTAACCAAGAAAGAATTACCTCCACGCCCATCGGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- -gaataac
- - - - - - - -tgttgtc
- - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaatg