1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtttcattttcaatttttgagtgcagggaaacccagaaacggaaataaaaaagtcaacttaccagagtttttcttttgttttgcttttccttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTGTGCTGTGCTTGGGTGGTGGGAAAAAG
species | Vitis vinifera |
transcript | Vv16s0050g00580.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|77578251|gb|DV217901.1|DV217901
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|161711673|gb|FC058267.1|FC058267
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|110708150|gb|EE085359.1|EE085359
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|110701388|gb|EE078904.1|EE078904
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|110698338|gb|EE075737.1|EE075737
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|110709005|gb|EE084087.1|EE084087
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|110698212|gb|EE075505.1|EE075505
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTEST: gi|71875014|gb|DT024069.1|DT024069
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
EST: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAG GAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
genomic: TAGGGCAAAAGGGGAAAAGAGGAGTCTTTCAAACTCCCCACTAGTCCAAGgtaaagtcct ... cttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTT
ataaaaaagtcaacttaccagagtttttcttttgttttgcttttccttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTGTGCTGTGCTTGGGTGGTGGGAAAAAG
aacttac putative branch site (score: 2)
tttttcttttgttttg putative PPT
tttttcttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttcattttcaatttttgagtgcagggaaacccagaaacggaaataaaaaagtcaacttaccagagtttttcttttgttttgcttttccttttctcagGAACCAAACGGTGGGCGATTGCGAGGCTTTTCTTTGGCTGAGAGTGGTTTTGTGCTGTGCTTGGGTGGTGGGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - tgagtgc
- - - - - - - - - - - - - - -aaaccca
- - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - aaagtcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttacca