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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaattctggggtttttgttcatgggttctatttgattcccgggaattatttgtttatttattttcctttgccggaatcttgtttttgggttcatgggttgtgtttgtttcctgagaatttttttccagaattttgatcttttggtggtggtgttgttagGTGGAGTGCACGATTCCGAAGGATGATGGAAGCCTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCA

Basic information

species Vitis vinifera
transcript Vv16s0039g02750.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02750.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G427097_T02 (Zea mays), 3'ss of exon 1
gttggaattctggggtttttgttcatgggttctatttgattcccgggaattatttgtttatttattttcctttgccggaatcttgtttttgggttcatgggttgtgtttgtttcctgagaatttttttccagaattttgatcttttggtggtggtgttgtt---agGTGGAGTGCACGATTCCGAAGGATGATGGAAGCCTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCA
                                                                         |  ||  ||        |   |  | | |||||   || ||   |  | |  ||        |   ||  |||| |  |||  ||      ||||||| ||||| || || || || || || ||| |||||||||  ||||||||||| |||||||||||||| || || ||||| ||||| || || ||| 
-------------------------------------------------------------------------gtgggggtccccccggcgccgt-gttgcttgtggc-gtctctctattaatcgttcgtgctggtcgaattgtttgctcatgggtttccccacagGTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGTTCCGCGTGCAGCATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcctgagaatttttttccagaattttgatcttttggtggtggtgttgttagGTGGAGTGCACGATTCCGAAGGATGATGGAAGCCTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCA
                          ttttgat  putative branch site (score: 4)
                        aattttgatctttt  TA-rich tract