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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaattctggggtttttgttcatgggttccgtttgattcccgggatttatttatttatttatttattttctttagccagaatcttgtttttgggttcatgggttgtgtttgtttcctaagaattttttccagaattttgatcttttggtggtggtgttgttagGTGGAGTGCACGATTCCGAAGGATGATGGAAGTTTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCA

Basic information

species Vitis vinifera
transcript Vv16s0039g02720.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02720.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM2G427097_T02 (Zea mays), 3'ss of exon 1
gttggaattctggggtttttgttcatgggttccgtttgattcccgggatttatttatttatttatttattttctttagccagaatcttgtttttgggttcatgggttgtgtttgtttcctaagaattttttccagaattttgatcttttggtggtggtgttgtt---agGTGGAGTGCACGATTCCGAAGGATGATGGAAGTTTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCA
                                                                             |   |  ||        |   |  | | |||||     |  |||  |||  ||        |   ||  |||| |  |||  ||      ||||||| ||||| || || || || || || || ||||||||||  ||||||||||| |||||||||||||| || || ||||| ||||| || || ||| 
-----------------------------------------------------------------------------gtgggggtccccccggcgccgt-gttgcttgtggcgtctctctattaatcgttcgtgctggtcgaattgtttgctcatgggtttccccacagGTGGAATGCACCATCCCCAAAGACGACGGCAGCTTGGCGACGTTCGTGGGGTTCCGCGTGCAGCATGATAACGCCCGCGGGCCGATGAAAGGCGGCATCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttcctaagaattttttccagaattttgatcttttggtggtggtgttgttagGTGGAGTGCACGATTCCGAAGGATGATGGAAGTTTGGCGACGTATGTGGGGTTCCGTGTGCAGCATGATAATGCTCGTGGGCCCATGAAGGGAGGGATCA
                          ttttgat  putative branch site (score: 4)
                        aattttgatctttt  TA-rich tract