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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgttgcaattcccttctcttgccttttgagtgaattggaggtggtttgacttgcttcatccttatcttagtgctgttttaattgatctcagACTGTTGCAATGAAATTTATTCTCAAGCATGGGAAAAGTGAGAAGGACATTCAGAATCTAAGACAGGAAATTGAG

Basic information

species Vitis vinifera
transcript Vv16s0039g02400.t01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S72_260V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------------------gtacttgttgcaattcccttctcttg-ccttttgagtgaattggaggtggt--------ttga---cttgcttcat------ccttatctta-gtgctg-------ttttaattgatctcagACTGTTGCAATGAAATTTATTCTCAAGCATGGGAAAAGTGAGAAGGACATTCAGAATCTAAGACAGGAAATTGAG
                            |    | | |||  |||| | | | |  | | || |     || || ||||        | ||    ||||| ||       | |||||  | ||||||       |||   ||| |  ||||||||||||||||| || ||| | |||||||| || ||||| ||||||||  | || || |||||||| ||||||
gttttattccttttaccttttgcatcatgcgactatagcacctcccgtttgtcggtcatctgtgcttcatgcagatggtcctttgcatcgagattttgctccaaaattcacattatccaatgtgctgcgattgctttgcgttgcttacagACTGTTGCAATGAAGTTCATTGTGAAGCATGGCAAGAGTGACAAGGACATCGACAACCTTAGACAGGAGATTGAG

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: PP1S53_93V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------------------------------------gtacttgttgcaattcccttctcttgccttttgagt--gaattggaggtggtttgacttgcttcatccttatcttagtgctgtttta-attgatctcagACTGTTGCAATGAAATTTATTCTCAAGCATGGGAAAAGTGAGAAGGACATTCAGAATCTAAGACAGGAAATTGAG
                                                  |          ||| |     |   |||||   |  |  ||     | |  |   | |        ||  |||        |  | ||||||  ||||| ||||||||||| ||||| ||||||||||| || || || ||||| ||| | ||||| |||||||| ||||||
gttagtaccttctaccacttgtatcatgtgagcatgtcacttaagcagagatcctcaatggttcacgcggttactcttttacatccgggttttgcttcgaatatttcgtcgatctattgacttgcgataactccacattgattgcagACGGTTGCAATGAAGTTTATACTCAAGCATGGCAAGAGCGACAAGGATATTGATAATCTCAGACAGGAGATTGAG

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ37043 (Selaginella moellendorffii), 3'ss of exon 1
gtacttgttgcaattcccttctcttgccttttgagtgaattggaggtggtttgacttgcttcatccttatcttagtgctgttttaattgatctcagACTGTTGCAATGAAATTTATTCTCAAGCATGGGAAAAGTGAGAAGGACATTCAGAATCTAAGACAGGAAATTGAG---
                                                 ||||  || ||   | |||  |    || |   |  || || |  ||||||| || |||||||||||||||||||| || || || || ||||||||  ||||| |  | || || ||||||   
-------------------------------------------------tttggttttct---tgcttgcccc--tgatcgatcgatcgacC--AGACTGTCGCCATGAAATTTATTCTCAAGCACGGCAAGAGCGACAAGGACATCGAGAATTTGCGGCAAGAGATTGAGGTA

upper sequence: Vv16s0039g02400.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: EFJ33693 (Selaginella moellendorffii), 3'ss of exon 1
gtacttgttgcaattcccttctcttgccttttgagtgaattggaggtggtttgacttgcttcatccttatcttagtgctgttttaattgatctcagACTGTTGCAATGAAATTTATTCTCAAGCATGGGAAAAGTGAGAAGGACATTCAGAATCTAAGACAGGAAATTGAG
                              ||  ||||  |  |  | ||||  |||||||   ||| |||           |  || || |  ||||||| || |||||||||||||||||||| || || || || ||||||||  ||||| |  | || || ||||||
-----------------------------gttctgtgagctacattttgtttttcttgcttgcccctgatcga---------tcgatcgacc--agACTGTCGCCATGAAATTTATTCTCAAGCACGGCAAGAGCGACAAGGACATCGAGAATTTGCGGCAAGAGATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaggtggtttgacttgcttcatccttatcttagtgctgttttaattgatctcagACTGTTGCAATGAAATTTATTCTCAAGCATGGGAAAAGTGAGAAGGACATTCAGAATCTAAGACAGGAAATTGAG
                                       ttttaattgat  TA-rich tract