1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...cccttcaatctctcactttcagtcattttcttgatacttgattaattcctctgatgctattttcttaatgtttgattctactcctttttaattttcatagGATCCAATGGAAGCAGCTTCAATAGCAGTGTAGCCGATCAACAA
species | Vitis vinifera |
transcript | Vv16s0022g02060.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAGAAAGAGTTCTCCGAGAAAGAGTTTTCCGAAAACGATCAGCCTGAAG GATTCAATGGAAGCAGCTTCAATAGCAGTGTAGCCGATCAACAAEST: gi|77585285|gb|DV221734.1|DV221734
genomic: CGAGAAAGAGTTCTCCGAGAAAGAGTTCTCCGAGAACGATCAGCCTGAAGgtaaggcttt ... attttcatagGATCCAATGGAAGCAGCTTCAATAGCAGTGTAGCCGATCAACAA
EST: CGAGAAAGAGTTCTCCGAGAAAGAGTTTTCCGAAAACGATCAGCCTGAAG GATTCAATGGAAGCAGCTTCAATAGCAGTGTAGCCGATCAACAA
genomic: CGAGAAAGAGTTCTCCGAGAAAGAGTTCTCCGAGAACGATCAGCCTGAAGgtaaggcttt ... attttcatagGATCCAATGGAAGCAGCTTCAATAGCAGTGTAGCCGATCAACAA
ttcctctgatgctattttcttaatgtttgattctactcctttttaattttcatagGATCCAATGGAAGCAGCTTCAATAGCAGTGTAGCCGATCAACAA
ttttaat putative branch site (score: 3)
ttctactcctttttaa CT-rich tract
tttttaattttcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccttcaatctctcactttcagtcattttcttgatacttgattaattcctctgatgctattttcttaatgtttgattctactcctttttaattttcatagGATCCAATGGAAGCAGCTTCAATAGCAGTGTAGCCGATCAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
cccttca
- - - - -ctctcac
- - - - - - - - - - - - - - - - - - - - - - - -cctctga