Sequence
atgc intronic sequence ATGC exonic sequence...ttatgtttttgcatttaatattagtttgtatactctttttcagctttcctatgtataattgatttgatatttctcattagtttgaatgctgtatttccagCCTTTTTTTCATGATGGGATGAAAGAGTGGAGTTGTTGCAAGAAAAGGAGTCATGATTTCAGCTTATTTCTAGCAATTCCAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02040.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GRMZM5G868908_T01 (Zea mays), 3'ss of exon 1
ttatgtttttgcatttaatattagtttgtatactctttttcagctttcctatgtataattgatttgatatttctca-ttagtttgaatgctgtatttccagCCTTTTTTTCATGATGGGATGAAAGAGTGGAGTTGTTGCAAGAAAAGGAGTCATGATTTCAGCTTATTTCTAGCAATTCCAGG
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ccaattgtttttattctcttgcaggcagta-agttttctcctttgttgagaggcatttttgtttaggaaattatcaacttctttaagatatatgttttcagCCTATGTTTCATGACGGCATGAAAGAATGGAGCTGCTGCAAGCAAAGAAGCCATGATTTCAGCTTATTTTTGCAGATACCTGG
upper sequence: Vv16s0022g02040.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA10G38720.1 (Glycine max), 3'ss of exon 1
ttatgtttttgcat-ttaatattagtttgtatactctttttcagctttcctatgtataattgatttgatatttctcattagtttgaatgctgt----atttccagCCTTTTTTTCATGATGGGATGAAAGAGTGGAGTTGTTGCAAGAAAAGGAGTCATGATTTCAGCTTATTTCTAGCAATTCCAGG
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----gtccatgcctatcaatctgtttcttcacaatggttttcttttctgtgaagattagct-atctgtttgttgtaattgattaagtttctactttaatttccagCCTATATTTCATGACGGGACAAAAGAATGGAGTTGTTGCAAGAAAAGAAGTCATGATTTTAGCTTGTTTTTGGAAATTCCAGG
upper sequence: Vv16s0022g02040.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: AT5G51700.1 (Arabidopsis thaliana), 3'ss of exon 2
-----ttatgtttttgcatttaatattagtttgtatactctttttcagctttcctatgtataattgatttgatatttctcattagtttgaatgctgtatttccagCCTTTTTTTCATGATGGGATGAAAGAGTGGAGTTGTTGCAAGAAAAGGAGTCATGATTTCAGCTTATTTCTAGCAATTCCAGG
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gtaagtcaaatttactcttcaaatactgttttatgtttttttttttg----tttcacactcgcttgctcagagaattaaagcta--ccaaagttcaaacttgcagCCATTTTTTCACGACGGAATGAAAGAGTGGAGCTGCTGCAAGCAAAGAAGTCATGATTTCAGTTTGTTCTTGGAAATTCCAGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctatgtataattgatttgatatttctcattagtttgaatgctgtatttccagCCTTTTTTTCATGATGGGATGAAAGAGTGGAGTTGTTGCAAGAAAAGGAGTCATGATTTCAGCTTATTTCTAGCAATTCCAGG
tatttcc CT-rich tract
atgtataattgatttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttatgtttttgcatttaatattagtttgtatactctttttcagctttcctatgtataattgatttgatatttctcattagtttgaatgctgtatttccagCCTTTTTTTCATGATGGGATGAAAGAGTGGAGTTGTTGCAAGAAAAGGAGTCATGATTTCAGCTTATTTCTAGCAATTCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgct