Sequence
atgc intronic sequence ATGC exonic sequencegtctatatgctaggtcgcggcgctgttggcggatgaagatgcggatgagaatttgagttccagttcttcttgcagGGGTTCAACTTTTCTTAACGTTGTTGCTCTTGGAAATGTCGGTGCTGGTAAATCTGCAGTTTTAAACAATTTGATTGGACATCCTGTTTTACCTATTGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0107g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA09G00430.1 (Glycine max), 3'ss of exon 1
gtctatatgctaggtcgcggcgctgttggcggatgaagatgcggatgagaatttgagttccagttcttcttgcagGGGTTCAAC-TTTTCTTAACGTTGTTGCTCTTGGAAATGTC----GGTGCTGGTAAATCTGCAGTTTTAAACAATTTGATTGGACATCCTGTTTTACCTATTGGA
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----------------------------------------gtaagt-atcctttttcttcctgtttctcttcttccgcatcgtcgttttcatcacttcacttaaattccaatttttttagGGTGCTGGTAAATCCGCAGTTCTCAACAGTTTGATTGGACATCCCGTTTTG---------
upper sequence: Vv15s0107g00170.t01 (Vitis vinifera), 3'ss of exon 1
lower sequence: GLYMA12G37100.1 (Glycine max), 3'ss of exon 1
gtctatatgctaggtcgcggcgctgttggcggatgaagatgcggatgagaatttgagttccagttcttcttgcagGGGTTCAACTTTTCTTAA-CGTTGTTGCTCTTGGAAATGTCGG-TGCTGGTAAATCTGCAGTTTTAAACAATTTGATTGGACATCCTGTTTTACCTATTGGA
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----------------------------------------gtaagtctcacttcttcgtttttctcttcttctgcgtcgtcgtttttcatcggtcacttcaattccaatttttgtagGGTGCTGGAAAATCCGCAGTTCTCAACAGTTTGATTGGACATCCCGTTTTG--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgctgttggcggatgaagatgcggatgagaatttgagttccagttcttcttgcagGGGTTCAACTTTTCTTAACGTTGTTGCTCTTGGAAATGTCGGTGCTGGTAAATCTGCAGTTTTAAACAATTTGATTGGACATCCTGTTTTACCTATTGGA
ttccagttcttctt CT-rich tract
agaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctatatgctaggtcgcggcgctgttggcggatgaagatgcggatgagaatttgagttccagttcttcttgcagGGGTTCAACTTTTCTTAACGTTGTTGCTCTTGGAAATGTCGGTGCTGGTAAATCTGCAGTTTTAAACAATTTGATTGGACATCCTGTTTTACCTATTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG