1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttggtaggttataggggtaacgtacctttgtgcgaatggctgaagtacccattctgaatttcataatttgcctccttatggtgtgatcctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGATTTTTACTATGCCCACGGTTTACTTGCGGATGCTTTTAAGAATTATGTTC
species | Vitis vinifera |
transcript | Vv15s0048g01980.t01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGG ACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGATEST: gi|110723714|gb|EE101344.1|EE101344
genomic: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGGgtatggtgtt ... ctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGAT
EST: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGG ACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGATEST: gi|110729208|gb|EE105294.1|EE105294
genomic: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGGgtatggtgtt ... ctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGAT
EST: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGG ACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGATEST: gi|161720414|gb|FC069856.1|FC069856
genomic: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGGgtatggtgtt ... ctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGAT
EST: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGG ACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCAGAGATEST: gi|110733048|gb|EE108868.1|EE108868
genomic: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGGgtatggtgtt ... ctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGAT
EST: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGG ACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGAT
genomic: GAGCCGACCAGAGGAAGGAGAAACTAGAGAATGAACTTAATGCTTACAGGgtatggtgtt ... ctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGAT
agtacccattctgaatttcataatttgcctccttatggtgtgatcctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGATTTTTACTATGCCCACGGTTTACTTGCGGATGCTTTTAAGAATTATGTTC
tcctttctgc CT-rich tract
tgaatttcataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggtaggttataggggtaacgtacctttgtgcgaatggctgaagtacccattctgaatttcataatttgcctccttatggtgtgatcctttctgcagACAAATTTAATCAAAGAAAGCATAAGAATGGGATACAATGACTTCGGAGATTTTTACTATGCCCACGGTTTACTTGCGGATGCTTTTAAGAATTATGTTC
- -tggtagg
- - - - - - - aggggtaa
- - - - - - - - - - - - - - tttgtgc
- - - - - - - - - - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - - - - - - -cccattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg