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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggaatatcgattttttttaattattattattattatttttaaatagtgcactttgaatgtttatttatgattgatatgattctttcccttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG

Basic information

species Vitis vinifera
transcript Vv15s0048g01290.t01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34320559|gb|CF373313.1|CF373313
EST:     CCCTCCG-CGCNCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: CCCTCCGCCGC-CGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|77580933|gb|DV219396.1|DV219396
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110387106|gb|EC951749.1|EC951749
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|34416260|gb|CF415014.1|CF415014
EST:     CCCTCCG-CGCCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: CCCTCCGCCG-CCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|352795349|gb|FQ476464.1|FQ476464
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110692354|gb|EE071504.1|EE071504
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110391304|gb|EC956269.1|EC956269
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|34415403|gb|CF414157.1|CF414157
EST:     TTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: TTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|77582171|gb|DV220047.1|DV220047
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|71876098|gb|DT025153.1|DT025153
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|34319505|gb|CF372259.1|CF372259
EST:     GCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|32249822|gb|CD715641.1|CD715641
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|27584880|gb|CB007575.1|CB007575
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|71871892|gb|DT020947.1|DT020947
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110686597|gb|EE064413.1|EE064413
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|351043680|gb|FQ431033.1|FQ431033
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGAGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110406199|gb|EC971762.1|EC971762
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|71871238|gb|DT020293.1|DT020293
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|30330289|gb|CD013551.1|CD013551
EST:     CCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: CCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110686299|gb|EE063779.1|EE063779
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110384243|gb|EC948668.1|EC948668
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|71872736|gb|DT021791.1|DT021791
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|32265218|gb|CD716807.1|CD716807
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|87585618|gb|DY474262.1|DY474262
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|30329674|gb|CD012936.1|CD012936
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|71870444|gb|DT019499.1|DT019499
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|349826849|gb|FQ418940.1|FQ418940
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|51050834|gb|CO818752.1|CO818752
EST:     CCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: CCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|110710456|gb|EE086805.1|EE086805
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
EST: gi|51989993|gb|CV179448.1|CV179448
EST:     GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTTGATCGAGAAAAG                         ACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
genomic: GCCCTCCGCCGCCGCCTCGTCCTCGTTTCGAACCCGTCGATCGAGAAAAGgttaagtttt ... ttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgcactttgaatgtttatttatgattgatatgattctttcccttgggtgcagACATGTCCTTTATTGCTTCGGGTTTTCACTAAG
                         gattgat  putative branch site (score: 4)
                                 tgattctttccctt  CT-rich tract
            aatgtttatttatgat  TA-rich tract